Method of researching gene function of Bradyrhizobium japonicum USDA110

A brachyrhizobia and gene technology, applied in the field of microorganisms, can solve the problems of researchers' difficulties, restrict the research on the function of brachyrhizobia genes, lack of suitable research methods, etc. The effect of speeding up the progress of experimental research

Active Publication Date: 2018-10-02
SOUTH CHINA AGRI UNIV
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

But it is very difficult for researchers
[0004] Due to the lack of suitable research

Method used

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  • Method of researching gene function of Bradyrhizobium japonicum USDA110
  • Method of researching gene function of Bradyrhizobium japonicum USDA110
  • Method of researching gene function of Bradyrhizobium japonicum USDA110

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0063] Example 1 Preparation of Pseudomonas aeruginosa PAO1 Electric Shock Competent Cells

[0064] The preparation of Pseudomonas aeruginosa PAO1 electric shock competent cells comprises the following steps:

[0065] (1) Pseudomonas aeruginosa PAO1 was shaken overnight for 8 hours, 6 mL was taken as a competent state, and divided into three 2 mL sterilized centrifuge tubes, room temperature was 10,000 rpm for 2 minutes, and the supernatant was removed;

[0066] (2) Resuspend with filter-sterilized 10% sucrose, wash once, room temperature 10000rpm, 2min, remove supernatant;

[0067] (3) Repeat step 2 twice;

[0068] (4) Concentrate into 100 μl with 10% glycerol and use for electroporation of the constructed plasmid.

Embodiment 2

[0069] Example 2 Construction of bradyrhizobium USDA110 bll5123 gene overexpression strain and colony phenotype observation

[0070] 1. Extraction of DNA

[0071] Genome kit (EE161-01) from Beijing Quanshijin Biotechnology Co., Ltd. was used to extract the whole genome of Bradyrhizobium USDA110.

[0072] 2. Amplification of the bll5123 gene

[0073] Utilize NEB high-fidelity Q5 polymerase, carry out following PCR amplification, obtain containing bradyrhizobium USDA110 bll5123 (Gene ID: 1051644, namely NC_004463.1:c5683715-5682342 Bradyrhizobium japonicum USDA110 chromosome, complete genome) gene product, the amplified product was connected to a cloning vector and transformed into Escherichia coli for sequencing after culture, the positive strains were retained, and the plasmid was extracted.

[0074] According to NCBI records, the nucleotide sequence of USDA110 bll5123 is shown in SEQ ID NO: 1, which is:

[0075] GTGTCCGCGCGTATCCTGGTTGTCGATGACGTTCCTGCCAACGTCAAACTCCTCGAGGCC...

Embodiment 3

[0092] Example 3 Determination of Growth Curve

[0093] 1. Shake the transformants PAO1-pBBR1MCS-5 and PAO1-pBBR1MCS-5-bll5123 constructed in Example 2 overnight for 8 hours (LB gentamicin 50 μg / mL), and then add LB gentamicin at a ratio of 1:100 Add 200 μl of damycin 50 μg / mL liquid to the plate for measuring the growth curve, and detect it with the instrument for measuring the growth curve. There are 8 replicates in each group, and the experimental results are repeated three times.

[0094] 2. Results

[0095] As determined by the growth curve, figure 2 It was shown that the strain PAO1-pBBR1MCS-5-bll5123 overexpressing Bradyrhizobium USDA110 bll5123 and the control strain PAO1-pBBR1MCS-5 had no effect on the growth rate, and the subsequent experiments excluded the effect of growth rate.

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Abstract

The invention discloses a method of researching functions of genes of Bradyrhizobium japonicum USDA110, and provides a prokaryotic expression system which utilizes pseudomonas aeruginosa as host bacteria; the pseudomonas aeruginosa is Pseudomonas aeruginosa PAO1. In the invention, phenotype research related to gene synthesis and degradation functions of intracellular messenger cyclic di-guanosinemonophosphate (c-di-GMP) in the Bradyrhizobium japonicum is directly carried out in the pseudomonas aeruginosa of which the background mechanism research is definite; by observing the character changes of the pseudomonas aeruginosa, functions of the target gene is initially obtained. The invention provides the novel prokaryotic expression system in which the gene of the Bradyrhizobium japonicum isexpressed and colonial morphology, moveability, generation of exopolysaccharide and generation quantity of biomembrane are inspected, thereby initially obtaining the function of the gene of the Bradyrhizobium japonicum. The method saves time and consumable costs, accelerates researching process and is beneficial to research on the gene function of Bradyrhizobium japonicum.

Description

technical field [0001] The invention relates to the technical field of microorganisms, and more specifically relates to a method for researching the function of the intracellular messenger cyclic guanosine diphosphate synthesis and degradation gene of Bradyrhizobium bacteria. Background technique [0002] Bradyrhizobia can coexist with plants, form effective nodules, and synthesize nitrogen sources for plant growth and utilization (Zhang Yanhua, Wang Hui, Wang Yan, etc. Phylogenetic diversity of Bradyrhizobia in Liaoning Province[J]. Jiangsu Agricultural Science , 2016, Vol. 44(7):67-70.). However, due to the long growth cycle of Bradyrhizobium, it takes as long as 8-10 hours for Bradyrhizobium to reproduce for one generation compared with other bacteria (the production and application status and research direction of nitrogen-fixing bacteria). The experimental period is long, and the screening of functional genes is time-consuming. The relationship between the intracellul...

Claims

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Application Information

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IPC IPC(8): C12N1/21C12N15/78C12N15/31C12R1/385
CPCC07K14/195C12N15/78
Inventor 戴伟君程蒙蒙
Owner SOUTH CHINA AGRI UNIV
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