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A combined liquid chromatography separation method for large-scale plasmid purification

A purification method and liquid chromatography technology, applied in the field of biomedicine, can solve the problems of not being able to recover pDNA with full load, increasing the sample volume, shortening the processing time, etc.

Active Publication Date: 2020-11-17
GUAN DINGTAI HAIGUI BIOLOGICAL TECH CO LTD
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  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0010] In dozens of experiments of the inventors using the official method recommended by BIA to purify the plasmid, the concentration of calcium chloride used in the precipitation of the lysate, the washing of the two monolithic columns, the concentration of the eluent, etc. have a significant impact on the quality and quantity of the purified plasmid. The impact has been carefully studied and found that: 1) adding CaCl to the lysate 2 The precipitate particles combined with RNA can be large or small, the large ones can be removed by centrifugation, and the small ones can only be removed by filtering through a 0.45 / 0.22μm capsule filter, so the quality of the filter used is high, otherwise these small particles may clog the column Pores in the body reduce its service life
2) CaCl 2 Precipitation removes incomplete RNA and removes a considerable portion of the plasmid at the same time, severely reducing its recovery
3) The BIA method relies on the high throughput and high flow rate of its monolithic column to not concentrate the lysate clarified liquid, and because it contains 0.5-1.0M CaCl 2 However, it is necessary to add several times the volume of TE solution to dilute the conductivity to reduce the conductivity, so that the loading volume of the CIM DEAE column is greatly increased and the processing time cannot be shortened; The water flow (for example, the maximum flow rate allowed by the 8ml monolithic column is 100ml / min) is not strong enough and may be partially lost
4) The nucleic acid load of the CIM DEAE weak anion exchange column is 6-8mg / ml (8ml column 48-64mg), due to CaCl 2 The treated lysate still contains a lot of RNA, which compete to occupy the binding sites in the column and reduce the binding and recovery of pDNA, that is, the column cannot fully recover pDNA
The present inventor has carried out many experiments with 8ml CIM DEAE column, and its pDNA recovery mostly is only 1 / 3 of its load of 16-18mg, fails to give full play to the load advantage of CIM DEAE column

Method used

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  • A combined liquid chromatography separation method for large-scale plasmid purification
  • A combined liquid chromatography separation method for large-scale plasmid purification
  • A combined liquid chromatography separation method for large-scale plasmid purification

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0065] Example 1 : The basic method of alkaline lysis to lyse bacteria and concentrate by hollow fiber ultrafiltration

[0066] Prepare the following three liquids with purified water: P1 liquid: 50mM Tris-HC1+10mM EDTA, pH8.0; P2 liquid: 0.2M NaOH+1% SDS; P3 liquid: 3M KAC adjusted to pH5.5 with glacial acetic acid.

[0067] The plasmid transformed into Escherichia coli cultured in the fermenter was collected by centrifugal sedimentation, and the wet weight was weighed. Add 10ml of P1 solution to each gram of bacteria in a large scale glass or plastic bottle to evenly resuspend the bacteria, then add 20ml of P2 solution and stir quickly for 8-10 seconds to lyse the bacteria, let it stand for 6-8 minutes to form a light yellow gelatinous solution, pipette Add 15ml of P3 solution pre-cooled at 4-10°C to the ice bath (per gram of wet weight bacteria can also use the ratio of P1:P2:P3=15ml:15ml:15ml) and stir for 8-10 seconds and let it stand for 20 minutes. Floating large pie...

Embodiment 2

[0068] Example 2 : a method for measuring the pDNA content of each component in each step and analyzing the ratio of each component of nucleic acid

[0069] (1) Method for detecting plasmid content in lysate and concentrated lysate with small 6FF column

[0070] Use the 4.4ml Bestrose 6FF small column of Bergeron Company and prepare 1.0M KAC solution

[0071] a) Make a plasmid concentration standard curve

[0072] Take the previously purified plasmid solution and use GE’s NanoVuePlus ultra-micro nucleic acid analyzer to determine the exact concentration, then use 1.0M KAC solution to make serial dilutions of 20μg / ml, 40μg / ml, 60μg / ml, 80μg / ml, and 100μg / ml Each solution is 1.2ml.

[0073] Use 1.0M KAC solution to equilibrate the 6FF small column to the baseline on the BioRad NGC medium-pressure chromatograph; take 1.0ml of the above-mentioned diluted solution and load the sample at a flow rate of 1.0ml / min, and wait 4-5 minutes after the peak appears on the computer screen...

Embodiment 3

[0082] Example 3 : The basic method of removing RNA from the lysate by gel filtration liquid chromatography to separate the pDNA fraction

[0083] On the NGC medium-pressure liquid chromatography separation device of BIO-RAD Company, 1 liter or 0.5 liter Bestrose 6FF gel column of Bogeron (Shanghai) Biotechnology Company was used, and TE (10-50mM Tris-HC1+10mM EDTA, pH 7.2) liquid equilibration, load the clarified lysate concentrated by hollow fiber ultrafiltration and filtered through a 0.45 μm filter. The loading amount was determined by preliminary experiments. After loading the sample, continue to wash with TE, collect the first peak of the macromolecule that comes down first, which is the pDNA component, and then discard the large peak of RNA that comes down. The peak area ratio of the two is usually between 1:8-12. After washing with TE solution until a flat baseline appears on the computer screen, perform the second and third loading to separate and collect pDNA frac...

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Abstract

The invention provides a plasmid purification method capable of being used for medicine stage nucleic acid pDNA (Plasmid Deoxyribonucleic Acid) vaccine scaled preparation. According to the method, a granular medium column liquid chromatography separation system and an Monoliths column liquid chromatography separation system developed in recent years are used in a combined way; the advantages of the granular medium column liquid chromatography separation system and the Monoliths column liquid chromatography separation system are sufficiently achieved in a mutual complementation way; the excellent effect is achieved; and high practical values are realized.

Description

technical field [0001] The invention relates to the field of biomedicine, in particular to a purification and separation process for plasmids used in gene vaccines and gene therapy, and more specifically, to a combined liquid chromatography separation method for large-scale plasmid purification. [0002] technical background [0003] Plasmid (pDNA) nucleic acid vaccine is a new type of vaccine under development. It has the advantage of inducing the body to produce a cellular immune response. It is good for the treatment of chronic hepatitis B, AIDS, tuberculosis, cancer and other diseases that require the induction of cellular immunity for which there is no effective vaccine at present. Application prospects, plasmid purification technology has also developed from the laboratory stage to the practical industrialization stage. [0004] Plasmids are circular DNA that can replicate and express independently of chromosomes in Escherichia coli cells. The engineered plasmid is a g...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): C12N15/10
CPCC12N15/101
Inventor 刘庆良李忠明柯尊阳
Owner GUAN DINGTAI HAIGUI BIOLOGICAL TECH CO LTD
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