A kind of Geomonas rf4 and its application
A technology of bacterium and RF4, applied in the field of microbiology, can solve the problem of few research reports on Geomonas resources
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Embodiment 1
[0029] Sample enrichment culture
[0030] Weigh 10g of paddy soil to 90mL of sterile MFM liquid medium, N 2 : CO 2 (V / V, 80:20) deoxygenated for 0.5 h to form an anaerobic environment, and then closed with an aluminum cap and then statically enriched and cultured at 30°C for 2 weeks.
[0031] MFM medium (L -1 ): 2.0g KHCO 3 , 0.02g MgSO 4 ·7H 2 O, 0.3g KH 2 PO 4 , 1.0g NH 4 Cl, 0.1 g MgCl 2 ·6H 2 O, 0.08g CaCl 2 ·2H 2 O, 0.6g NaCl, 9.52g HEPES, 10mL mineral solution [(L -1 ): NTAT Trisodium Salt (Free acid) 1.50g, MgSO 4 3.00g, MnSO 4 ·H 2 O 0.50g, NaCl 1.00g, FeSO 4 ·7H 2 O 0.10g, CaCl 2 ·2H 2 O 0.10g, CoCl 2 ·6H 2 O 0.10g, ZnCl 2 0.13 g, CuSO 4 ·5H 2 O 0.01g, AlK (SO 4 ) 2 ·12H 2 O 0.01g, H 3 BO 3 0.01 g, NaMoO 4 ·2H 2 O 0.09g], 10mL vitamin mixture [(L -1 ): Biotin 0.002g, pantothenic acid 0.005g, vitamin B12 0.0001g, p-aminobenzoic acid 0.005g, lipoic acid (α-) 0.005g, niacin 0.005g, thiamine 0.005g, riboflavin 0.005g, hydrochloric acid Pyr...
Embodiment 2
[0058] 16S rRNA gene identification
[0059] The isolated strains were amplified by universal primers 27F (5'-GAG TTTGAT CCT GGC TCA G-3') and 1492R (5'-ACG GCT ACCTTG TTA CGA CTT-3') for the bacterial 16S rRNA gene.
[0060] PCR reaction program: pre-denaturation at 94 °C for 5 min; denaturation at 94 °C for 30 s, annealing at 55 °C for 60 s, extension at 72 °C for 90 s, a total of 30 cycles; final extension at 72 °C for 10 min. Take 5 μL of PCR products and spot them on a 1% agarose gel, with 100bp Marker as the standard molecular weight, 100V voltage, electrophoresis for 30min, and observe the electrophoresis results with a gel imaging system. The PCR products of the strains with detected bands were sent to Sangon Bioengineering (Shanghai) Co., Ltd. for sequencing. ContigExpress software was used to proofread the 16S rRNA gene sequence obtained by sequencing, and the cluttered bases at the head and tail ends were removed, and the obtained effective sequence was submitted t...
Embodiment 3
[0070] Fatty acid detection
[0071]①Bacteria harvesting: Pick about 40 mg of bacteria in logarithmic phase (cultured for 3 days) and put them in a test tube with a screw cap (size 13mm×100mm).
[0072] ②Saponification: Add 1.0 mL of saponification reagent to the test tube, tighten the lid, shake the test tube for 5-10 s with a shaker, take a boiling water bath for 5 min, take it out and continue to shake for 5-10 s, tighten the lid again, continue the water bath for 25 min, remove the test tube, and cool at room temperature.
[0073] ③Methylation: Add 2.0 mL of methylation reagent to the test tube, tighten the lid, shake with a shaker for 5-10 s, take a water bath at 80°C for 10 min, remove the test tube and quickly rinse with tap water to cool to room temperature.
[0074] ④Extraction: Add 1.25mL of extraction reagent, tighten the cap, shake quickly for 10min, open the tube cap, suck out the lower water-like phase of the test tube with a pipette and discard it.
[0075] ⑤Wa...
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