Method for detecting aquatic animal pathogenic bacteria by using ribosome interoperonic region probe

A technology for probe detection and aquatic animals, applied in biochemical equipment and methods, biological testing, material inspection products, etc., can solve the problems of difficult identification of probes and unsatisfactory identification results

Inactive Publication Date: 2006-12-13
NANKAI UNIV +1
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  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

Therefore, it is difficult to design similar species identification probes using the differential sites on the 16S rRNA gene, and the identification effect is often unsatisfactory.

Method used

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  • Method for detecting aquatic animal pathogenic bacteria by using ribosome interoperonic region probe
  • Method for detecting aquatic animal pathogenic bacteria by using ribosome interoperonic region probe
  • Method for detecting aquatic animal pathogenic bacteria by using ribosome interoperonic region probe

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0137] Sample: A certain batch of exported live fish. Routine microbial culture and biochemical detection revealed suspected colonies of Clostridium perfringens.

[0138] 1. DNA extraction

[0139] Take one gram each of the epidermis, kidney tissue, liver tissue, and heart of the sample fish scales, mix and shake after homogenization, take 1 mL of the homogenate solution and let it stand in an ice bath for 5 minutes, then centrifuge at 12,000 rpm for 5 minutes at room temperature, Discard the supernatant, add 100 μL lysozyme solution, incubate at 37°C for 10 minutes, add 500 μl TE buffer, shake and mix well. Add the same volume of Tris saturated phenol with a pH value of 8.0, shake vigorously at 12,000 rpm, centrifuge for 3 minutes, absorb the supernatant, and repeat the phenol extraction. Aspirate the supernatant, add 0.1 times the volume of sodium acetate (2mol / L), mix well, add an equal volume of ice ethanol, mix well, let stand at low temperature for 30 minutes, and cent...

Embodiment 2

[0175] Sample: A certain batch of exported live fish. Routine microbial culture and biochemical detection revealed suspected colonies of Edward tarda.

[0176] 1. DNA extraction

[0177] 2. PCR amplification of 16S-23S rRNA gene fragment

[0178] 3. Hybridization of the target gene amplification product with the probe on the nylon membrane

[0179] 4. ELISA color development of hybridization positive spots

[0180] The ELISA of the hybridization spots was performed according to the instructions of Roche Digoxigenin DNA Labeling and Detection Kit.

[0181] *Result interpretation

[0182] Interpretation of hybridization results Probe site 10 (Edwardia tarda probe 1 Etar1) and probe site 11 (Edwardia tarda probe 2 Etar2) on the nylon membrane are all dark blue spots, indicating positive hybridization results. The sample contained Edwardsiella tarda, see image 3 .

[0183] After 2 days, routine microbial culture was used to conclude that Edwardsiella lentus was contained i...

Embodiment 3

[0185]Sample: A certain batch of imported live fish. Suspected colonies of Vibrio vulnificus were detected by routine microbial culture and biochemical detection.

[0186] 1. DNA extraction

[0187] 2. PCR amplification of 16S-23S rRNA gene fragment

[0188] 3. Hybridization of the target gene amplification product with the probe on the nylon membrane

[0189] 4. ELISA color development of hybridization positive spots

[0190] The ELISA of the hybridization spots was performed according to the instructions of Roche Digoxigenin DNA Labeling and Detection Kit.

[0191] * Interpretation of results Interpretation of hybridization results Probe site 32 (Vibrio vulnificus probe 1 VvulI1p1) and probe site 33 (Vibrio vulnificus probe 2 VvulI1p2) on the nylon membrane are all dark blue, which means positive hybridization As a result, it was shown that the sample contained Vibrio vulnificus, see Figure 4 .

[0192] After 5 days, routine microbial culture was used to conclude that...

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Abstract

The invention discloses a bacteria detecting technology which comprises designing special probes with biological information, including designing 34 pieces oligonucleotide as filtered probes and the corresponding PCR and hybridizing reacting conditions; enlarging via PCR and marking bacteria 16s-23srRNA gene interval array with Digoxin, and hybridizing the PCR products and a group of special oligonucleotide probes; after enzyme-linked immunoassay color-rendering, identifying whether has aquatic infectious pathogeny bacteria from the sample.

Description

technical field [0001] The present invention relates to a kind of bacterium detection technology, specifically is to use nucleic acid molecular hybridization reaction to detect pathogenic bacteria, especially aquatic animal pathogenic bacteria (comprising Aeromonas salmonicida, Aeromonas hydrophila, Aeromonas caviae, Clostridium perfringens, Clostridium botulinum, Edwardsiella catfish, Enterococcus piscicida, Streptococcus, Flexibacter psychrophilus, Flexibacter columnar, Pasteurella multocida, Pasteur piscicida Bacteria, Pseudomonas putida, Pseudomonas fluorescens, Pseudomonas syringae, Vibrio cholerae, Vibrio mimicus, Vibrio harveii, Vibrio vulnificus, Vibrio parahaemolyticus, Vibrio riverina, Freundii Vibrio, Vibrio alginolyticus and other 23 kinds of bacteria) technology. Background technique [0002] At present, the detection methods of pathogenic microorganisms in aquatic animals basically rely on biochemical identification and culture identification. These identific...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): G01N33/53G01N21/78C12Q1/04
Inventor 黄熙泰侯艳梅刘寅张立怀郑泽军高旗利周浩董志珍李永君王玉玲魏晓娜霍蕾
Owner NANKAI UNIV
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