Real-time fluorescence PCR ( Polymerase Chain Reaction) kit for detecting shigella and detection method thereof
A real-time fluorescence, kit technology, applied in microorganism-based methods, fluorescence/phosphorescence, biochemical equipment and methods, etc., can solve the problems of low positive rate, long time, complicated operation, etc. The effect of high positive rate and high detection sensitivity
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Embodiment 1
[0043] Example 1: Specific primers, fluorescent probes
[0044] 1. Materials:
[0045] Premix Ex Taq TM (2×) was purchased from TaKaRa Company (DRR039S);
[0046] MX3000P quantitative PCR instrument is a product of STRATAGNE, USA.
[0047] 2. Primer and probe design and synthesis:
[0048] Using the Shigella ipaH gene sequence (registration number DQ448042) as a template, use PrimerExpressTM (V2.0, American ABI Company) software analyzes TaqMan-MGB primers and probe sites, and selects the best combination:
[0049] Upstream primer: 5′-GGAAAACCCTCCTGGTCCAT-3′
[0050] Downstream primer: 5′-CGCCGGTATCATTATCGAAAA-3′
[0051] Fluorescent probe: 5′-FAM-AGGCATCAGAAGGC-MGB-3′
[0052] Wherein FAM is a fluorescent reporter group, and MGB is a fluorescent quencher group.
[0053] Both were synthesized by Dalian Bao Biological Engineering Co., Ltd.
Embodiment 2
[0054] Embodiment 2: Specificity evaluation of Shigella fluorescent quantitative PCR method
[0055] 1. Strain detection:
[0056] Three Shigella standard strains (Shigella dysenteriae CMCC 51570, Shigella sonnei CMCC51334, Shigella flexneri ATCC 12022), 30 strains of Shigella isolates, Escherichia coli, Salmonella, Citrobacter, Escherichia coli, Vibrio parahaemolyticus, Yersinia, Proteus, Staphylococcus epidermidis, Staphylococcus aureus, Streptococcus pyogenes, Alcaligenes faecalis, Lactobacillus lymannii, Bacillus cereus, Salmonella anativa, Streptococcus mirabilis Proteus, hemolytic streptococcus and other 91 strains of non-Shigella bacteria suspension were extracted by pyrolysis method, and then PCR amplification was carried out on the MX3000P quantitative PCR instrument of American STRATAGNE company with the upstream and downstream primers and probes for detection.
[0057] (1) Thermal cracking method: collect the strains in a 1.5mL tube, place in a boiling water bath f...
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