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A method for extracting free DNA from serum plasma

A plasma and serum technology, applied in the field of free DNA extraction, can solve the problems of poor enrichment of free DNA by the adsorption membrane, low concentration of free DNA, poor repeatability of nucleic acid, etc., and achieve a suitable extraction process for large-scale promotion and application Simple, increasing difficulty effects

Active Publication Date: 2018-11-02
GUANGZHOU KANGDING INFORMATION SCI & TECH CO LTD
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

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Problems solved by technology

However, the magnetic bead method is used to extract nucleic acid technology, which uses magnetic nanoparticles, uses the principle of absorbing nucleic acid at high salt and low pH, and then separates nucleic acid at low salt and high pH to separate and purify sample nucleic acid, but its operation is too complicated , and needs to be incubated with ProteinaseK at a certain temperature, and multi-step washing steps are required at the same time, resulting in poor repeatability and low extraction efficiency of nucleic acid extraction
[0006] Patent document CN106011131A discloses a method for separating free nucleic acid from plasma, which uses a silica matrix membrane spin column to separate and purify free nucleic acid. When extracting nucleic acid, this method does not require organic extraction and completely removes pollutants and inhibitors. The use of DNA greatly simplifies the process of concentrating and purifying free DNA from plasma. However, the adsorption membrane does not have a good enrichment effect on free DNA, resulting in a low concentration of free DNA extracted.

Method used

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  • A method for extracting free DNA from serum plasma
  • A method for extracting free DNA from serum plasma
  • A method for extracting free DNA from serum plasma

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0044] Embodiment 1, the preparation of silicon dioxide nanomaterial film:

[0045] A: Add the cage-type mesoporous silica nanomaterial into deionized water and stir evenly, then add N-carboxymethyl chitosan and stir evenly, then stir at 70°C for 4 hours, the silica nanomaterial and N-carboxylate The weight ratio of methyl chitosan is 3:2, filter, and wash 2 times with deionized water, collect powder after freeze-drying, obtain the modified silicon oxide nanomaterial;

[0046] B dissolving N-carboxymethyl chitosan in deionized medium and stirring evenly to prepare a film-forming solution of N-carboxymethyl chitosan with a mass concentration of 5%;

[0047] C, adding the modified silicon oxide nanomaterial obtained in step A to the film-forming liquid obtained in step B, the solid-liquid ratio of the modified silicon oxide nano-material to the film-forming liquid is 1g:5ml, drying, and forming a film , that is.

Embodiment 2

[0048] Embodiment 2, a kind of method extracting free DNA from serum plasma

[0049] S1 Take 200 μl of serum sample into a 1.5ml centrifuge tube, add 600 μl of Lysis Solution A, mix upside down or vortex, and place in a water bath at 65°C for 5 minutes to obtain Mixed Solution I;

[0050] The preparation method of described lysate A is: the concentration is 60mmol / LTris-Hcl, 0.3g sodium chloride, 0.8g edetate disodium, 10g resveratrol, 8g puerarin, volume concentration is 4% Alkyl glucoside, the volume concentration is that 40% isopropanol solution is added in the beaker for dissolving, transfers in the volumetric flask, the DEPC treatment water is settled to 50ml, adjusts the pH value to be 6.0, makes;

[0051] S2 Transfer the mixed solution I obtained in step S1 to an adsorption column, place it at room temperature for 5 minutes, centrifuge at a speed of 12000 rpm for 1 minute, and pour off the waste liquid in the collection tube;

[0052] S3 Put the adsorption column treat...

Embodiment 3

[0056] Embodiment 3, a kind of method for extracting free DNA from serum plasma

[0057] S1 Take 200 μl of plasma sample into a 1.5ml centrifuge tube, add 600 μl of lysate A, mix upside down or vortex, and place in a water bath at 65°C for 5 minutes to obtain mixed solution I;

[0058] The preparation method of described lysate A is: the concentration is 70mmol / LTris-Hcl, 0.5g sodium chloride, 1.2g edetate disodium, 16g resveratrol, 12g puerarin, volume concentration is 6% Alkyl glucoside, the volume concentration is that 40% isopropanol solution is added in the beaker for dissolving, transfers in the volumetric flask, the DEPC treatment water is settled to 50ml, adjusts the pH value to be 5.2, makes;

[0059] S2 Transfer the mixed solution I obtained in step S1 to an adsorption column, place it at room temperature for 5 minutes, centrifuge at a speed of 12000 rpm for 1 minute, and pour off the waste liquid in the collection tube;

[0060] S3 Put the adsorption column treated...

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PUM

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Abstract

The invention belongs to the technical field of molecular biology, and particularly relates to a method for extracting free DNA from serum and plasma. The method for extracting free DNA from serum andplasma comprises the following steps: cracking a sample to be tested by adopting a specific cracking solution; and then enriching and purifying free DNA by adopting a self-made adsorption column membrane, thereby obtaining high-quality free DNA. The free DNA extracted withthe method for extracting the free DNA from serum and plasma has the advantages of high yield and high purity; and meanwhile,the method for extracting the free DNA from serum and plasma, provided by the invention, can also prevent free radicals from damaging the free DNA, ensures the integrity of the extracted free DNA, isbeneficial to subsequent prenatal diagnosis and early tumor screening, and has great significance to clinical medicine.

Description

technical field [0001] The invention belongs to the technical field of molecular biology, and in particular relates to a method for extracting free DNA from serum plasma. Background technique [0002] Nucleic acid includes deoxyribonucleic acid (DNA) and ribonucleic acid (RNA), which are biological macromolecules with genetic information. The DNA of eukaryotes mainly exists in the nucleus in the form of chromosomes, but there is also a small part of DNA located outside the cell, which is called free DNA (Cell-free DNA), which can exist in the form of single-stranded or double-stranded DNA , most free DNA is double-stranded DNA in the form of nucleoprotein and the fragments are small, generally between tens or hundreds of bp in length. [0003] Studies have found that cell-free DNA contains very important genetic information; in 1997, YMDLo et al. detected the existence of Y chromosome in the peripheral blood of pregnant women who were pregnant with male fetuses, which prove...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): C12N15/10C12Q1/6806
CPCC12N15/101C12Q1/6806C12Q2523/308
Inventor 艾鹏陶勇黄玉萍王美锦刘腾飞陆嫚云
Owner GUANGZHOU KANGDING INFORMATION SCI & TECH CO LTD