Human agkistrodon acutus venom immune ScFv antibody library and construction method thereof
A technology of a pit viper and a construction method, which is applied in the field of human-derived pit viper venom phage antibody display, and can solve the problems of reduced titer, increased dosage of antiserum, different toxicity and immunogenicity, etc.
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Embodiment 1
[0054] Embodiment 1 primer design
[0055] Amplification of the variable region gene of a Agkistrodon venom antibody
[0056] 1. Design of primers for human antibody V gene region amplification:
[0057] The reference material comes from "Daniele Sblattero, Andrew Bradbury, A definitive set of oligonucleotide primers for amplifying human V regions. Immunotechnology3 (1998) 271–278."; V BASE database website: http: / / vbase.mrc-cpe.cam.ac.uk
[0058] The primer sequences involved are as follows:
[0059]
[0060] According to the above reference sequence and the planned T7 Phage Select System (Novagen) phage sequence, this experiment designed the antibody variable region gene V H , V L The primers introduce EcoRI and HindIII restriction endonuclease sites at the upstream and downstream respectively. Specifically designed primers are as follows:
[0061]
[0062]
[0063] where r=a / g, y=c / t, m=a / c, k=g / t, s=c / g, w=a / t, h=a / c / t, b=c / g / t, v=a / c / g, d=a / g / t, n=a / c / g / ...
Embodiment 2
[0064] Example two total cDNA extraction
[0065] 1. Extract total RNA from whole blood of positive patients
[0066] 1) Pre-experiment - small amount of total RNA extraction
[0067] Thaw the whole blood stored at -70°C on ice, take 3ml and put it into a 15ml centrifuge tube, add 6ml TRNzol-A+, 3ml chloroform, and mix thoroughly for 5 minutes. Centrifuge at 10,000g for 10 minutes, absorb about 2.5ml of the supernatant and add to a new 15ml centrifuge tube, add 2.5ml of isopropanol and 250μl of sodium acetate, mix by inverting and place on ice for 1 hour. Centrifuge at 10,000g for 20 minutes, wash the pellet twice with 70% ethanol, dry at 37°C, add 50μl TE to dissolve and transfer to a 1.5ml centrifuge tube. Determination of total RNA: OD260 / 280=1.94, 20ng / μl, 3ml of whole blood can get a total of about 1μg of RNA. According to the estimation of 1% as mRNA, the total mRNA is about 10-30ng, which is far from enough to meet the requirement of RT-PCR.
[0068] 2) Extract a lar...
Embodiment 3
[0078] Example 3 PCR Amplification of Total Antibody Gene V Segments
[0079] Main reagents: polymerase. (CatNo.: DR010A, TaKaRa Company), gel recovery DNA purification kit (CatNo.: 28706, Qiagen Company).
[0080] 1) to V L and V H Amplification of the area:
[0081] V H Region; upstream primers VL1-01-F, VL1-02-F and downstream primers VL1-01-R, VL1-02-R are paired to amplify V L 1 region; upstream primers VL2-01-F, VL2-02-F, VL2-03-F paired with downstream primers VL2-01-R, VL2-02-R to amplify the VL2 region.
[0082] The 20μl reaction system is as follows:
[0083]
[0084] PCR reaction program:
[0085]
[0086] The amplified product was subjected to 1.5% agarose gel electrophoresis, and the loading volume was 3 μl / well. The results were as follows: For V L Region amplification, the target fragment size is about 360bp, such as figure 2 shown. to V H For the amplification of the region, the target fragment is about 370bp, such as image 3 shown.
[0087]...
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