Compositions comprising high concentration of biologically active molecules and processes for preparing the same

Inactive Publication Date: 2009-01-01
VGXI
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Benefits of technology

[0015]A further aspect of the present invention comprises large scale processes for producing high purity samples of at least one biologically active molecule of interest from bacterial cells, comprising the steps of: contacting the bacterial cells in a dispersion of cells with lysis solution to form a lysate solution; neutralizing the lysate solution by mixing a neutralization solution into the lysate solution with a bubble column mixer to form a neutralized mixture; filtering the neutralized mixture through a primary filter and a secondary filter to form a filtered solution; passing the filtered solution through an ion-exchange column to form a ion-exchange solution; passing the ion-exchange solution through a hydrophobic interaction column or a hydrophobic interaction membrane to form a hydrophobic interaction solution; and ultrafiltration

Problems solved by technology

Production of such molecules in living cells offers numerous advantages over alternative productions methods but isolation and purification issues arise when extracting biologically active molecules from cells.
Cell lysis and the subsequent treatment steps used to prepare a process stream for purification, are the most difficult, complex, and important steps in any plasmid process.
The search for an optimal method, one which is continuous, scaleable, and yielding high quality product that can be formulated at high concentration irrespective of plasmid size, has been an obstacle in getting acceptable processes to commercial capability.
Unfortunately, this method presents significant challenges for large scale preparations (or scaled-up production).
However, this is impractical at large scale, where volumes may be in the range of tens or hundreds of liters.
Common techniques for mixing large volumes of liquid, such as impeller mixing, are problematic because as some cells begin to lyse after initial mixing, they release genomic DNA which dramatically increases solution viscosity.
This increase in viscosity significantly interferes with further mixing.
Another challenge is that excessive incubation at high pH after addition of alkaline lysis solution can lead to permanent denaturati

Method used

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  • Compositions comprising high concentration of biologically active molecules and processes for preparing the same
  • Compositions comprising high concentration of biologically active molecules and processes for preparing the same
  • Compositions comprising high concentration of biologically active molecules and processes for preparing the same

Examples

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example 1

[0081]Escherichia coli (“E. coli”) cells containing a plasmid A were fermented to high density of an optical cell density (“OD600”) at 72 when harvested by centrifugation. Plasmid A has a size of 6549 bp. The plasmid typically replicates at a low copy number of ˜250 copies / cell. Approximately 3.1 kg wet cell weight (“WCW”) of cell paste was suspended in a resuspension buffer consisting of 25 mM Tris-hydrochloride (“Tris-HCl”, J. T. Baker, Phillipsburg, N.J.), 10 mM edetate disodium (“Na2EDTA”, Fisher Scientific, Fair Lawn, N.J.), pH 8, to a final volume of approximately 21.5 L. This cell suspension was pumped at 300 mL / min into one side of a “Y” connector. Simultaneously, lysis solution consisting of 0.2 N sodium hydroxide (“NaOH”, J. T. Baker, Phillipsburg, N.J.), 1% sodium dodecyl sulfate (“SDS”, J. T. Baker, Phillipsburg, N.J.) was pumped at 300 mL / min into the other side of the “Y” connector. The combined fluids exiting the “Y” connector were immediately passed through a Silvers...

example 2

[0091]An amount of 3140 gram E. coli cells containing plasmid B was resuspended in resuspension buffer consisting of 25 mM Tris-HCl (J. T. Baker, Phillipsburg, N.J.) at the pH of 8 and 10 mM Na2EDTA, to a final volume of 18.8 L. Plasmid B has a size of 4.7 kb. The resuspended cells were mixed with the lysis solution consisting of 0.2 N NaOH (J. T. Baker, Phillipsburg, N.J.) and 1% SDS (J. T. Baker, Phillipsburg, N.J.) at an equal flow rate of 300 mL / min by a Silverson Model L4R rotor / stator mixer, which was operated at a rotor speed of 800 rpm. The lysate effluent from mixer retained 5-minute holding time in the holding coil before entering the bubble column to mix with the pre-chilled (4-5° C.) neutralization / precipitation (NP) solution. The NP solution containing 1 M potassium acetate (J. T. Baker, Phillipsburg, N.J.) and 3 M ammonium acetate (EMD Chemicals, Inc., Bibbstown, N.J.) was fed to the bubble column mixer at 600 mL / min, simultaneously, the compressed air was introduced f...

example 3

[0093]E. coli cells containing a plasmid C (plasmid size of 3.5 kb) were fermented to high cell density and harvested by centrifugation. A wet cell weight of 24.4 kg cells were recovered from 400-L working volume of fermentation. The cells were resuspended with 171 L of resuspension buffer consisting of 25 mM Tris-HCl (J. T. Baker, Phillipsburg, N.J.) at the pH of 8 and 10 mM Na2EDTA (Mallinckrodt Baker, Phillipsburg, N.J.) for a period of 3 hours. The resuspended cells were mixed with fresh lysis solution by Silverson high shear mixer at the same flow rate of 600 ml / min, and held for approximately 5 min accomplished by a holding loop. The neutralization / precipitation solution consisting of 1 M potassium acetate (J. T. Baker, Phillipsburg, N.J.) and 3 M ammonium acetate (EMD Chemicals, Inc., Bibbstown, N.J.) were pumped to the bubble mixer at a flow rate of 1.2 L / min to mix with lysed cells. Compressed air fed at a gas flow rate of 5-6 slpm served as the mixing force and transportin...

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Abstract

Large scale processes for producing high purity samples of biologically active molecules of interest from bacterial cells are disclosed. The methods comprise the steps of producing a lysate solution by contacting a cell suspension of said plurality of cells with lysis solution; neutralizing said lysate solution with a neutralizing solution to produce a dispersion that comprises neutralized lysate solution and debris; filtering the dispersion through at least one filter; performing ion exchange separation on said neutralized lysate solution to produce an ion exchange eluate; and performing hydrophobic interaction separation on said ion exchange eluate to produce a hydrophobic interaction solution. Further, provided are compositions comprising large scale amounts of plasmid DNA produced by the disclosed large scale processes.

Description

CROSS REFERENCE TO RELATED APPLICATION[0001]This application claims the benefit of U.S. Provisional Application No. 60 / 939,792, filed May 23, 2007, the contents of which are incorporated herein by reference.FIELD OF THE INVENTION[0002]The present invention relates to bulk compositions comprising biologically active molecules such as plasmids in high concentrations and processes for producing such compositions.BACKGROUND OF THE INVENTION[0003]There are numerous uses of biologically active molecules produced in and isolated from cells. U.S. Publication Serial No. 20050014245, which is incorporated herein by reference, discloses devices and methods for biomaterial production. Biologically active molecules include proteins and nucleic acid molecules. Production of such molecules in living cells offers numerous advantages over alternative productions methods but isolation and purification issues arise when extracting biologically active molecules from cells. There are various components ...

Claims

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Application Information

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IPC IPC(8): C12P1/00C12N15/00
CPCC12N15/1017C12N1/06C12M1/12C12N15/10C07K1/20
Inventor DRAGHIA-AKLI, RUXANDRAHEBEL, HENRYCAI, YING
Owner VGXI
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