The invention provides a neutron capture therapy system. The neutron capture therapy system can effectively utilize space and conduct therapy on multiple patients at the same time, does not elongate the beam transmission path excessively and thus has low loss. The neutron capture therapy system comprises an accelerator, a beam transmission assembly and neutron beam generation parts, wherein the accelerator accelerates charged particles to generate charged particle beams, the beam transmission assembly transmits the charged particle beams generated by the accelerator to the neutron beam generation part, and the neutron beam generation parts generate neuron beams for therapy and comprise a first neuron beam generation part, a second neutron beam generation part and a third neutron beam generation part; the beam transmission assembly comprises a first transmission part, a beam direction converter, a second transmission part, a third transmission part and a fourth transmission part, wherein the first transmission part is connected with the accelerator, the beam direction converter switches the heading direction of the charged particle beams, and the second transmission part, the thirdtransmission part and the fourth transmission part transmit the charged particle beams from the beam direction converter to the first neutron beam generation part, the second neutron beam generation part and the third neutron beam generation part respectively, two of the first transmission part, the third transmission part and the fourth transmission part define a first plane, the first transmission part and the second transmission part define a second plane, and the first plane is different from the second plane.