A flow sensing fuel system for multiple port fuel injection gasoline engines, gasoline direct injection engines, or common rail diesel engines include a flow monitoring device positioned in a fuel flow passage between a fuel pump and a fuel rail, a fuel pressure sensor in fluid communication with said fuel rail, and a controllable pressure regulator closing to a fuel tank. By integrating flow monitoring device, fuel pressure sensor, and controllable pressure regulator in existing fuel systems, a flow sensing fuel system is provided that protects the engine and limits the fuel leaking into the environment in case of a stuck open condition or sealing problem of one or more injectors or in case of a leak in the fuel rail assembly. The flow sensing fuel system enables monitoring the fuel flow during engine start-up, during engine operation, and after engine shut down.