Primer, probe composition and kit for detecting exon copy number variation of human DMD gene

A copy number variation and exon technology, used in biochemical equipment and methods, recombinant DNA technology, and microbial assay/inspection, etc., can solve problems such as increased fragility, decreased stability, and rupture of muscle cell membranes. The effect of simple operation, low requirements and low operator skill requirements

Pending Publication Date: 2021-09-07
北京华瑞康源生物科技发展有限公司
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

The mutation of DMD gene can destroy its mRNA open reading frame, seriously affect the synthesis and function of dystrophin protein, lead to the destruction of dystrophin protein complex, increase the fragility and stability of muscle cell membrane, strong muscle contraction aggravates the rupture of muscle cell membrane, and makes calcium Ion influx accelerates muscle fiber destruction leading to clinical manifestations of Duchenne / Bein muscular dystrophy

Method used

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  • Primer, probe composition and kit for detecting exon copy number variation of human DMD gene
  • Primer, probe composition and kit for detecting exon copy number variation of human DMD gene
  • Primer, probe composition and kit for detecting exon copy number variation of human DMD gene

Examples

Experimental program
Comparison scheme
Effect test

Embodiment

[0031] The real-time fluorescent PCR method of the present embodiment detects the test kit (100 reactions / box) of exon 53 copy number variation of human DMD gene and comprises components, as shown in table 1:

[0032] Table 1. Kit components

[0033]

[0034] The specific primers and probe nucleotide sequences of the No. 53 exon of the human DMD gene in the exon reaction solution are shown in SEQ ID NO.1-SEQ ID NO.3;

[0035] The specific primers and probe nucleotide sequences of CFTR gene are shown in SEQ ID NO.4-SEQ ID NO.6;

[0036] PCR master mix: purchased from Nanjing Novizan Biotechnology Co., Ltd., Cat No: Q113-03. Contains hot start Taq enzyme, UNG enzyme, 4 kinds of dNTP, PCR reaction buffer, ROX fluorescent reference dye;

[0037] Negative control substance: including specific plasmid 1 and water, the nucleotide sequence of specific plasmid 1 is shown in SEQ ID No.7; specific plasmid 1 is the artificially synthesized DNA sequence of internal reference CFTR gene...

experiment example

[0049] Using the kit prepared in the above examples, human peripheral blood free DNA or gDNA is used as a sample to detect exon 53 of the human Duchenne / Baissel muscular dystrophy gene DMD gene:

[0050] (1) Nucleic acid extraction:

[0051] The whole blood samples of 2 children with clinical diagnosis of DMD, 2 normal females, and 2 normal males were obtained from a hospital. Use Tianlong Automatic Nucleic Acid Extractor (NP968-3S) and matching Tianlong Whole Blood Genomic DNA Extraction Kit to extract whole blood samples collected in EDTA anticoagulant tubes, and use a micro-ultraviolet spectrophotometer to determine the nucleic acid purity after extraction and concentration, its OD 260 / 280 Between 1.6-2.0; dilute the genomic DNA concentration with sterilized double distilled water to 20ng / μL for later use.

[0052] (2) Dilution of reference substance:

[0053] Dissolve the positive control substance and negative control substance for use.

[0054] (3) The PCR reaction s...

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Abstract

The invention belongs to the technical field of biological detection, and discloses a primer, a probe composition and a kit for detecting exon copy number variation of a human DMD gene. According to the kit, through a real-time fluorescent PCR technology, a highly conserved region of a DMD gene 53 exon gene coding region is taken as a target region, a corresponding specific primer probe is designed, a CFTR gene is taken as a reference gene, a false negative result possibly occurring in a PCR reaction process is monitored, whether a DMD patient has 53 exon copy number variation or not is rapidly detected, thereby playing an auxiliary role in diagnosis of a doctor on a DMD patient, and also providing scientific guidance data for the doctor in the aspect of medication. In the application process, the requirement for detection equipment is low, operation is easy, detection can be completed on a machine only by adding a sample DNA, an exon reaction liquid and a PCR premixed liquid, the requirement for skills of operators is low, and sample confusion can be effectively prevented. The kit has the advantages of good reliability, simple operation, low equipment requirement and low reagent cost.

Description

technical field [0001] The invention belongs to the technical field of biological detection, and in particular relates to a primer and probe composition and a kit for detecting the variation of exon copy number of human DMD gene. Background technique [0002] Duchenne / Beckman muscμLar dystrophy (DMD / BMD) is an X-linked recessive genetic disease characterized by progressive muscle weakness and muscle atrophy caused by DMD gene mutations leading to dystrophin protein deficiency Hereditary Muscle Disease. Its clinical features include: muscle cramps, myalgia, quadriceps myopathy, asymptomatic hypercreatine kinaseemia, X-linked dilated cardiomyopathy, etc. [0003] DMD is fully penetrant in males and is characterized by progressive, symmetrical weakness that is more proximal than distal. Children usually walk late, fall easily, and walk slowly. The abnormal gait becomes obvious around the age of 3; motor development continues to improve at the beginning, but gradually shows th...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/6883C12Q1/6858C12N15/11
CPCC12Q1/6883C12Q1/6858C12Q2600/156C12Q2600/166C12Q2531/113C12Q2545/101C12Q2563/107C12Q2537/16
Inventor 吴文立于超计王倩玉肖江山赵立明
Owner 北京华瑞康源生物科技发展有限公司
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