The invention discloses a many-core system processor resource scheduling method based on thermal perception dynamic task migration. The method comprises the following steps of 1, detecting whether a waiting sequence is empty or not; If not, mapping the application, and then carrying out the step 2; 2, detecting whether the arrival queue is empty or not; If not, executing the step 3; Step 3, detecting whether no application runs in the system, if not, respectively estimating the running and waiting time of the bubble by using the model, and searching an optimal bubble distribution result through a branch boundary algorithm; 4, searching an optimal bubble distribution result through a branch boundary algorithm; Step 5, an application mapping stage; and step 6, an application running stage. According to the method, the black silicon phenomenon is utilized, application arrival queues with different lengths are adapted according to the application arrival rate and the calculation sensitivity or communication sensitivity characteristic of the application, the task running frequency is kept, the variable application arrival rate can be responded, the throughput rate of the system is effectively increased, and the system performance is improved.