Loop-mediated isothermal amplification primer set, kit and detection method for Klebsiella pneumoniae
A Klebsiella pneumoniae, ring-mediated isothermal technology, applied in the biological field, can solve problems such as complexity, poor repeatability of results, and high cost, and achieve the effects of preventing cross-contamination, requiring no equipment, and preventing false positives
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Embodiment 1
[0018] Example 1: LAMP nucleic acid test strip detection kit for Klebsiella pneumoniae specificity test nucleic acid test strip detection.
[0019] Bacterial strains used in the test: fish-pathogenic Klebsiella pneumoniae, coded as a1; Aeromonas victoria, coded as a2; Aeromonas sobria, coded as a3; Aeromonas hydrophila, coded as a4 ; Aeromonas caviae, coded a5; Citrobacter fischeri, coded a6; Flavobacterium columnar, coded a7; Pseudomonas putida, coded a8; Pseudomonas aeruginosa, coded a9; Pleuromonas Shigella, coded a10; Edwardsiella tarda, coded a11; Shewanella putrefaciens, coded a12; Vibrio anguillarum, coded a13; Vibrio alginolyticus, coded a14; Vibrio parahaemolyticus , numbered a15; Vibrio cholerae, numbered a16.
[0020] Culture of bacterial strains: Klebsiella pneumoniae, Aeromonas victoria, Aeromonas sobria, Aeromonas hydrophila, Aeromonas caviae, Citrobacter fischeri, Pseudomonas putida, Pseudomonas aeruginosa Monomonas, Pseudomonas shigellai, Edwardsiella tarda, ...
Embodiment 2
[0023] Example 2: LAMP nucleic acid test strip detection kit for Klebsiella pneumoniae sensitivity test nucleic acid test strip detection.
[0024] The concentration of the Klebsiella pneumoniae template was measured by a micro-nucleic acid analyzer, and then a 10-fold serial dilution was performed. After LAMP amplification of templates with different concentrations, the detection of nucleic acid test strips showed that the template concentration was 2×10 -6 At μg / μl, two clear red bands can still be observed, one in the quality control area (C line), one in the detection area (T line), the template concentration is 2×10 -7 At μg / μl, 2 red bands can also be observed, indicating that the lowest concentration of the template that can be detected by the LAMP reaction is 2×10 -7 μg / μl, where 1 is DNA Marker, and the concentrations of Klebsiella pneumoniae templates in samples b1-b10 are 20 μg / μl, 2 μg / μl, 2×10 -1 μg / μl, 2×10 -2 μg / μl, 2×10 -3 μg / μl, 2×10 -4 μg / μl, 2×10 -5 μg...
Embodiment 3
[0025] Example 3: The LAMP nucleic acid test strip detection kit for Klebsiella pneumoniae was used to detect the nucleic acid test strips of 18 strain samples.
[0026] Collection of strain samples: isolate and collect 18 samples from diseased fish, respectively c1-c18.
[0027] Using the LAMP method and nucleic acid test strip detection method described in Example 1, 18 isolated bacterial strains were detected, and the T vector clone containing the FimK gene sequence (GenBank accession number EU044788.1) was used as a positive quality control product numbered c19, sterile ddH 2 O was used as the negative quality control product numbered c20.
[0028] Containing the preparation of FimK gene sequence T vector clone: take Klebsiella pneumoniae as template, utilize FimK primer pair (SEQID NO:1 and SEQ ID NO:2) to carry out PCR amplification, obtain the amplified product of 265bp, through sequencing and The sequence of the GenBank accession number EU044788.1 was consistent, a...
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