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Synthesis method and application of N-substituted-5-methylene-pyrrole-2-ketone compound

A ketone compound, methylene pyrrole technology, applied in the field of biomolecular conjugate labeling, can solve problems such as protein structure and function changes, and achieve the effects of fast reaction rate, wide application prospect and high selectivity

Inactive Publication Date: 2017-05-31
NANKAI UNIV
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

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Problems solved by technology

These methods all use high concentrations of small thiol molecules as release agents, and small thiol molecules themselves may react with cysteine, resulting in changes in protein structure and function

Method used

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  • Synthesis method and application of N-substituted-5-methylene-pyrrole-2-ketone compound
  • Synthesis method and application of N-substituted-5-methylene-pyrrole-2-ketone compound
  • Synthesis method and application of N-substituted-5-methylene-pyrrole-2-ketone compound

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Experimental program
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Embodiment 1

[0033] A kind of synthetic method of N-substituted-5-methylene-pyrrol-2-one compound, the chemical structural formula of described N-substituted-5-methylene-pyrrol-2-one compound is:

[0034]

[0035] Wherein R is glycinamide;

[0036] The synthesis method is as follows:

[0037]

[0038] Weigh 202 mg (1 mmol, 1 eq) of 2,5-dimethoxy-2,5-dihydrofurfuryl alcohol acetate into a flask, add 4 mL of 0.1 M HCl aqueous solution, and stir at room temperature for 3 h. The reaction system was neutralized to neutral with sodium bicarbonate solid, and 0.4 mL of 500 mM HEPES buffer was added to adjust the pH to 7.5. Add 148mg (2mmol, 2eq) of glycinamide to the resulting mixture, and react at room temperature for 1h. The solvent was removed by rotary evaporation and separated by methanol / dichloromethane (v / v, 1 / 10) column chromatography to obtain 136 mg of a yellow solid with a yield of 90%. Rf = 0.42 (methanol / dichloromethane = 1 / 10, v / v). 1H NMR (400MHz, DMSO) δ7.48(s,1H),7.31(d,...

Embodiment 2

[0060] A kind of synthetic method of N-substituted-5-methylene-pyrrol-2-one compound, the chemical structural formula of described N-substituted-5-methylene-pyrrol-2-one compound is:

[0061]

[0062] Wherein R is propargyl amine;

[0063] The synthesis method is as follows:

[0064]

[0065] Weigh 202 mg (1 mmol, 1 eq) of 2,5-dimethoxy-2,5-dihydrofurfuryl alcohol acetate into a flask, add 4 mL of 0.1 M HCl aqueous solution, and stir at room temperature for 3 h. The reaction system was neutralized to neutral with sodium bicarbonate solid, and 0.4 mL of 500 mM HEPES buffer solution (50 mM, pH 7.5) was added to adjust the pH to weakly alkaline. Add 28 mg (0.5 mmol, 0.5 eq) of propargylamine to the resulting mixture, and react at room temperature for 1 h. The solvent was removed by rotary evaporation and separated by petroleum ether / ethyl acetate (v / v, 4 / 1) column chromatography to obtain 54 mg of a colorless oily liquid (yield 80%). Rf=0.49 (petroleum ether / ethyl acetat...

Embodiment 3

[0069] A kind of synthetic method of N-substituted-5-methylene-pyrrol-2-one compound, the chemical structural formula of described N-substituted-5-methylene-pyrrol-2-one compound is:

[0070]

[0071] Wherein R is the anticancer drug doxorubicin;

[0072] The synthesis method is as follows:

[0073]

[0074] Weigh 202mg (1mmol, 1eq) of 2,5-dimethoxy-2,5-dihydroacetic acid furfuryl alcohol ester into a flask, add 4mL of 0.1M HCl aqueous solution, and stir at room temperature for 3h. The reaction system was neutralized to neutral with sodium bicarbonate solid, and 0.4 mL of 500 mM HEPES buffer was added to adjust the pH to 7.5. To the resulting mixture was added 290 mg (0.5 mmol, 0.5 eq) of adriamycin in DMSO (1 mL) and reacted at room temperature for 1 h. Extracted three times with 5 mL of dichloromethane, dried over anhydrous magnesium sulfate, removed the solvent by rotary evaporation, and separated by methanol / dichloromethane (v / v, 2%) column chromatography to obtain...

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Abstract

The invention provides a synthesis method of an N-substituted-5-methylene-pyrrole-2-ketone compound. A chemical structural formula of the N-substituted-5-methylene-pyrrole-2-ketone compound is shown in the description, wherein R is glycinamide, fluorescein, biotin, propargyl group, an anti-medicine, namely doxorubicin, or a long-chain alkane solid-phase carrier. The synthesis method of the N-substituted-5-methylene-pyrrole-2-ketone compound has the advantages that a compound containing primary amino is converted in one step to obtain a labeled molecule and a preparation method is simple; the molecule is very stable in a neutral water solution, and can be highly selectively subjected to Michael addition reaction with sulfydryl of cysteine; a reaction speed is rapid and no chiral center is generated. An addition product is stable under neutral and weak acidic conditions, and the Michael addition reaction can occur in the presence of a buffering solution with the pH (Potential of Hydrogen) value of 9.5 or excessive amount of mercaptoethanol, so as to eliminate the labeled molecule from the sulfydryl, and furthermore, controlled releasing of the labeled molecule is realized.

Description

technical field [0001] The invention belongs to the field of biomolecular conjugate labeling, in particular to a synthesis method of N-substituted-5-methylene-pyrrol-2-one compounds and its application in reversible bioconjugate labeling. Background technique [0002] Peptides and proteins with labels and functional groups are widely used as tools for drug molecules or biomedical research, and site-directed chemical modification is an important means of preparing such substances [Chem.Rev.2015,115,2174-2195] . Among the 20 natural amino acids, cysteine ​​has a relatively low natural abundance and has the highest nucleophilic activity under physiological conditions, so it is the most commonly used amino acid residue for site-directed modification of polypeptides and proteins. Traditional cysteine-specific bioconjugated labeling molecules include N-substituted maleimides, 2-iodoacetamides, halogenated alkanes, and pyridyl disulfides, such as figure 1 shown. [0003] N-subst...

Claims

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Application Information

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IPC IPC(8): C07D207/44C07D207/38C07H19/044C07H1/00C07D493/10C07D495/04C07K1/22C07K1/13
CPCC07D207/44C07D207/38C07D493/10C07D495/04C07H1/00C07H19/044C07K1/13C07K1/22
Inventor 周传政席真章映茜周小平谢永辉
Owner NANKAI UNIV