Beta-1,4-glucanase encoding gene and preparation method and application thereof
A glucanase and coding technology, applied in application, glycosylase, genetic engineering and other directions, can solve the problems of few hemicellulose substrates, unsuitable for large-scale application, weak degradation activity of konjac polysaccharide, etc., and achieve high efficiency. Degradation effect
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Embodiment 1
[0056] Example 1 Endo-β-1,4-glucanase full-length gene cloning
[0057] Genomic DNA of Paenibacillus polymyxa was extracted according to the operation steps of Genomic DNA Purification Kit (Thermo, LOT 00105781). After performing multiple sequence alignment analysis on the endo-β-1,4-glucanase gene sequence in The National Center for Biotechnology Information (NCBI) database, a degenerate primer Ppglu-F: 5'-CGGACGCATATGGCCAGYGTGAAAGGATATTATC-3' was designed; Ppglu-R: 5'-GATGATCTCGAGTTCGGCKSYTGCTTYMRCTTGC-3', using the extracted Paenibacillus polymyxa genomic DNA as a template to amplify the gene sequence encoding the mature protein of endoβ-1,4-glucanase (excluding the signal peptide gene). The PCR reaction conditions were: 94°C for 3min, 1 cycle; 94°C for 30s, 68°C for 30s (0.5°C drop per cycle), 72°C for 1min30s, 30 cycles; 72°C for 5min, 1 cycle. PCR products were analyzed by agarose gel electrophoresis (see figure 1 ), the target gene was cleaned and recovered, connecte...
Embodiment 2
[0058] Example 2 Endo-β-1,4-Glucanase Gene Sequence Analysis
[0059] The sequencing results were analyzed using Basic Local Alignment Search Tool (BLAST) in the GenBank database, DNAMAN software was used for multiple sequence alignment, and Vector NTI was used to analyze sequence information.
[0060] The coding region of the obtained endo-β-1,4-glucanase gene (named Ppglu) is 1125 bp long, and its nucleotide sequence is shown in SEQ ID NO 1. Ppglu encodes 374 amino acids and a stop codon, its amino acid sequence is shown in SEQ ID NO 2, the theoretical molecular weight of the protein is 42.18kDa, and the predicted isoelectric point is 5.58. The amino acids encoded by Ppglu mainly contain a cellulase domain, and its domain characteristics are more similar to those of GH1 family members, so it is classified as GH1 family.
Embodiment 3
[0061] Recombinant expression and purification of embodiment 3Ppglu gene in Escherichia coli
[0062] In order to facilitate the recombinant expression of the gene, NdeI and XhoI restriction sites were respectively introduced into the designed upstream and downstream primers. The PCR cleaning product Ppglu and the expression vector pET21a were double-digested with NdeI and XhoI, respectively, and the digested products were cleaned and recovered, and T 4 DNA ligase connection (ligation system: (5μLT 4 DNA Ligase 0.5μL, 10×T 4 DNA LigaseBuffer 0.5 μL, pET21a 2 μL, PCR product 2 μL), ligation conditions: overnight at room temperature. ). Take 5 μL of the ligation product to transform E.coli TOP10 competent cells, spread on solid Luria-Bertani medium containing 100 μg / mL ampicillin, and culture at 37°C for 12-16h. Pick a single clone, use degenerate primers for colony PCR verification, insert the correctly amplified single clone into liquid Luria-Bertani medium containing 100 ...
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