Real-time fluorescence RPA detection kit for aspergillus fumigatus as well as special primer and probe thereof
A kit, the technology of Aspergillus fumigatus, which is applied in biochemical equipment and methods, microbiological determination/inspection, DNA/RNA fragments, etc., can solve the problems of expensive equipment, false negatives, difficult clinical detection of Aspergillus fumigatus, etc.
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Embodiment 1
[0067] Embodiment 1 designs the real-time fluorescent RPA primer that Aspergillus fumigatus detects and exo probe
[0068] The sequence (GenBank: KU575861.1) of the annexin anxC4 gene (anxC4 or ANXC4) of Aspergillus fumigatus was retrieved from NCBI's nucleic acid database GenBank (http: / / www.ncbi.nlm.nih.gov), and performed with DNA Man software. After comparison, the Aspergillus fumigatus anxC4 gene was obtained as the specific conserved sequence of Aspergillus fumigatus (it is specific to other fungi and humans, so it is used as a detection template); select the Aspergillus fumigatus anxC4 gene (GenBank: KU575861.1) The reverse complementary sequence is used as a template, and the primers and For exo probe design, a total of 1 probe and multiple upstream primers and downstream primers are designed. Any 1 upstream primer and 1 downstream primer can form a set of combinations. A set of primer-probe combinations with the best performance was screened through sensitivity te...
Embodiment 2
[0078] Embodiment 2 uses primer of the present invention and Exo probes for real-time fluorescent RPA detection of Aspergillus fumigatus
[0079] 1. Extract the genomic DNA of Aspergillus fumigatus
[0080] Extract the genomic DNA of Aspergillus fumigatus (ATCC13073) with CTAB method, and concrete method comprises the following steps:
[0081] 1) Prepare CTAB (cetyltrimethylammonium bromide) extraction buffer (pH 8.0): weigh 30g of cetyltrimethylammonium bromide (CTAB), 12.12g of Tris, ethylenediaminetetra Acetic acid (EDTA) 5.84g, sodium chloride (NaCl) 82g, fully stirred and dissolved with 800mL deionized water, then add 100mL dithiothreitol (DTT) solution, adjust pH to 8.0 with NaOH, and finally dilute to 1L, Store at room temperature;
[0082] 2) Prepare CIA solution: CIA saturated phenol / chloroform / isoamyl alcohol 25:24:1 (V / V / V), store at 4°C;
[0083] 3) Add 600 μL of CTAB extraction buffer to the Aspergillus fumigatus sample, shake and mix well, and lyse at 65°C (...
Embodiment 3
[0100] Embodiment 3 detects the specificity of Aspergillus fumigatus real-time fluorescence RPA detection method
[0101] Aspergillus fumigatus (ATCC 13073), Aspergillus flavus, Aspergillus niger, Aspergillus terreus, Aspergillus nidulans, Aspergillus versicolor, Candida albicans, Candida tropicalis, Candida parapsilosis, Candida krusei, Candida glabrata, Cryptomonas Coccus, Cryptococcus nails, Cryptococcus neoformans, Penicillium citrinum, Penicillium manefei, Exophiala acanthus, Exophiala dermatitidis, Histoplasma capsulatus, Fusarium oxysporum, Trichophyton rubrum, Golden yellow Staphylococcus, Acinetobacter baumannii (the above strains are all from the Nosocomial Infection Supervision Center of the Chinese People's Liberation Army Institute for Disease Control and Prevention), human A549 cell gene DNA as templates, and 10 4 Copy / 2μL Aspergillus fumigatus cloning plasmid pMD19-T-anxC4 standard product was used as a positive control, and sterile deionized water was used as a...
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