The invention discloses a method for processing and applying organic fertilizer and a processing system. The applying method comprises the following steps: after adding water into solid organic fertilizer and retting, filtering or directly filtering liquid-state organic fertilizer to obtain organic fertilizer filtrate, carrying out drip irrigation on the organic fertilizer filtrate by an irrigation device into the root area of a crop and the like. The invention also provides a system realizing the method. By the method, the solid organic fertilizer which is commonly used in farmhouses is processed into uniform liquid-state fertilizer capable of carrying out irrigation and drip application, and the uniformity of fertilization is ensured; a traditional organic fertilizer application mode isfundamentally changed, and the invention is clean, sanitary, timesaving and laboursaving, can utilize the prior conventional irrigation device, has low running cost and low technical requirement, is simple and practical and is very suitable for popularization and application in industries applying drip-irrigation fertilization facilities, such as fruit gardens, tea gardens, economic forests, vegetables and the like, in hills and mountainous areas in China.