The invention relates to a self-coherent MUSIC algorithm-based global positioning system interference suppressing method, which is implemented by combining subspace projection and routine beam forming technology. The method comprises the following steps: projecting signals received by an array antenna to an interference orthogonal complement space; for the projected data, estimating the satellite signal coming direction by utilizing a self-coherent MUSIC algorithm; and performing beam forming on the projected data by utilizing the estimated satellite signal direction. By combining the subspace projection and the routine beam forming technology, the method is a secondary anti-interference method; firstly, the interference is suppressed by utilizing a projection matrix of the interference orthogonal complement space; and secondly, satellite signals are strengthened by utilizing the routine beam forming technology. In the process of strengthening the satellite signals by utilizing the routine beam forming technology, for the projected data, the satellite signal coming direction is estimated by utilizing the self-coherent MUSIC algorithm, and the routine beam forming is performed by utilizing the estimated satellite signal direction. Through the method, interference suppression is realized, the satellite signals are ensured to be not attenuated, an inertial navigation auxiliary unit is not needed, and the method has high estimation accuracy and high resolution ratio.