The application relates to a method for generating a target AAV9
antibody epitope affinity
peptide ligand by using a
protein language model and a
screening method and application thereof, and relates to an affinity
peptide candidate sequence construction and
screening method, an affinity
peptide ligand, an affinity medium and application thereof for targeting adeno-associated
virus type 9 (AAV9). The AAV9
capsid region recognized by Fab2-4 is taken as a target,
structure analysis, natural
amino acid positioning, key residue extraction and affinity peptide template construction are carried out, a candidate
peptide library is generated by using a
protein language model, and a candidate affinity
peptide ligand is screened by combining molecular docking,
binding free energy evaluation, refined docking and
molecular dynamics simulation. The affinity
peptide ligand is any one of SEQ ID NO. 1, SEQ ID NO. 2, SEQ ID NO. 3 or SEQ ID NO. 4, can be immobilized on a
solid phase matrix to form an affinity medium, is used for AAV9 recognition, capture and purification, and provides a technical scheme for AAV9 purification
process development.