The invention provides an intelligent gate system and a control method, which are used for toll collection systems in highways, subways, and other similar scenes. Entrance gates and Exit gates are used to acquire passing stations of users, and toll collection is carried out according to the passing stations, and then by adopting an automatic charging mode, automatic fee paying is realized. The queuing and fee-paying time of the users is greatly saved, and the time costs of the users are reduced, and in addition, a lot of manpower costs are saved for related departments, and costs of ticket vending machines, magnetic cards, and electronic labels are saved, and therefore by popularizing the intelligent gate system and the control method, the congestion conditions of the highways and the subways are obviously improved.