The invention discloses a crossbreeding method of a peach breed with nonshowy flowers. The method comprises the steps as follows: male parent pollen collection, female parent selection, female parent flower pretreatment, female parent flower castration, pollination, seed collection, treatment, individual hybrid planting, trimming and identification and evaluation for fruiting characters. According to the method, different treatment methods are adopted for male parents with different flowering phases of parents, the method is suitable for crossbreeding of flowers in all flowering phases, and influence caused by flowering asynchronism is avoided; aiming at characteristics of the nonshowy flowers, styles are protected by bags at the early development stage of the flowers, so that the flowers are prevented from being pollinated by other breeds, and low-temperature freezing damage in the spring is prevented; a rubber hose is taken as a contact head, so that the cost is low, one-time use is realized, cross contamination is avoided, and bruising of stigma caused by pollination can be relieved; different treatment methods are adopted for seeds of fruits at different growth periods, so that the seedling rate of hybrid seeds is remarkably increased; different planting manners and trimming methods are adopted for individual hybrid plant, thus, the land source and the labor cost are greatly saved; and economic characters of fruits are screened and eliminated.