The invention discloses an immunoaffinity column based on a bispecific monoclonal antibody for aflatoxin B1 and ochratoxin A and application of the immunoaffinity column, and specifically discloses a preparation method of the bispecific monoclonal antibody for aflatoxin B1 (AFB1) and ochratoxin A (OTA). According to the invention, a hybridoma cell capable of stably secreting an antibody capable of simultaneously recognizing both AFB1 and OTA is obtained, and the prepared bispecific monoclonal antibody can be used in the preparation of an immunoaffinity column. The affinity column can simultaneously extract two objects AFB1 and OTA only by coupling one antibody, coupling rate is easy to adjust and measure, number of binding sites of the two objects is equal, structure is uniform, and interference is less. The immunoaffinity column disclosed by the invention can be used in combination with ELISA, has characteristics of simplicity, convenience, rapidness, strong specificity and relatively high sensitivity, and has important application value in detecting and monitoring AFB1 and OTA multi-residues in food and agricultural products.