The invention belongs to the technical field of intestinal lavage equipment, and particularly relates to a method for lavaging an intestinal tract through an intestinal stoma, which comprises the following steps: 1, preparing a lavaging device which comprises a water injection pipe, a water outlet is arranged on an insertion section of the water injection pipe, at least two flexible bags are arranged on the front side of the water outlet, each flexible bag is independently connected with a pump structure; 2, operating a pump structure to enable the flexible bag to be in a contraction state, and then inserting the insertion section of the water injection pipe into the intestinal tract; 3, a water injection pipe is controlled to inject water. Meanwhile, a pump structure is sequentially and continuously operated, all the flexible bags are sequentially and continuously expanded and contracted, and the intestinal fragments making contact with all the flexible bags form wriggling fluctuation; 4, after lavage of the intestinal fragments in the step 3 is finished, the water injection pipe is pushed by a certain distance along the intestinal tract, and then operation in the step 3 is repeated. according to the scheme, the problem that in the prior art, full lavage cannot be conducted on waste intestinal tracts which are left out for a long time is solved.