The invention discloses a hospital scientific research management system for reasonable distribution of scientific research resources, and the system comprises a server, a project management subsystem, a scientific research resource management subsystem, a scientific research achievement management subsystem and an operation management subsystem. The project management subsystem comprises a project declaration module, a project auditing module, a demand statistics module and a change query module; the scientific research resource management subsystem comprises a hardware resource management module, a software resource management module, a fund management module, a scientific research personnel management module and a resource allocation module; the operation management subsystem comprisesa system setting module, an authority management module, a backup and recovery module and a maintenance upgrading module. In conclusion, the system is complete, convenient to use, reasonable in resource distribution and the like.