The invention provides a trajectory capture test system for simultaneous separation simulation of double external stores, and belongs to the field of high-speed wind tunnel test technology and aircraft flight mechanics. The trajectory capture test system comprises a half-arm attack angle mechanism installed on a wind tunnel test section, and an aerial carrier model is fixedly connected with the half-arm attack angle mechanism through an aerial carrier supporting rod; a missile-loaded base is connected with the wall surface of the wind tunnel test section through a vertical movement mechanism, parallel bottom plates are connected with the missile-loaded base through rotating shafts, three-degree-of-freedom parallel mechanisms are installed on the parallel bottom plates respectively, the other ends of the three-degree-of-freedom parallel mechanisms are connected with a movable platform, and a rolling driving mechanism is arranged in the movable platform; and the movable platform is connected with missile-loaded balances and missile-loaded models through missile-loaded support rods. According to the invention, the two missile-loaded balances are used for respectively measuring the aerodynamic force and torque applied to the missile-loaded models, the motion modes of the two missile-loaded models are inversely solved, the motion of each driving device is controlled, the multi-degree-of-freedom position and attitude change of the two missile-loaded models is realized in a wind tunnel test section, and the simulation of the motion trajectory of the double-external store model is realized.