The invention discloses an antenna control system and method of a phased array radar, and belongs to the technical fields of radio orientation, radio navigation, radio wave range finding or velocity measurement, positioning or existence detection via reflection or re-radiation of radio waves, and similar devices with other waves. The system comprises an antenna array module, an array plane selector switch module, a transmitting-receiving amplifier and filter module, a phase shifter and power divider module, a GPS/BD positioning module, an attitude sensor module, a control and power supply module and a wave beam oriented automatic control module. The system and method can satisfy the requirements of minimization, low power consumption, high radiation efficiency and high isolation degree. Compared with a traditional phased array configuration system, the number of RF transmitting-receiving channels is reduced to 1/5, the power consumption is reduced to 1/5 correspondingly, a switch linephase shifter is used, the phase delay within the work bandwidth satisfies the time delay characteristic of a signal space, and different frequency points are directed accurately; all machinery related equipment is omitted; and the total power consumption is reduced greatly.