The present invention relates to an
in vitro method of diagnosis, prognosis, therapeutic
response control, response prediction of a specific
human disease, comprising the steps of: (i) providing a human sample, preferably a blood sample, more preferably a
plasma sample, or a serum sample or
buffy coat sample from a subject; (ii) preparing a first
nucleic acid sequencing
library from nucleic acids present in the sample; (iii) hybridizing one or more TAC oligonucleotides from a first
library of TAC oligonucleotides (TAC
oligonucleotide-1) to the first
library of nucleic acids, thereby isolating a subset of first library
nucleic acid molecules; (iv) sequencing the first subset of library
nucleic acid molecules and comparing the determined sequences to human reference sequences, thereby creating a first set of presumption information sequence variants (PISV 1); (v) hybridizing one or more TAC oligonucleotides from a second
bank of smaller TAC oligonucleotides comprising TAC oligonucleotides (TAC oligonucleotides-2) specific for nucleic acid molecules of the first set of inferred information sequence variants to the first library of nucleic acid molecules, thereby isolating a subset of second library nucleic acid molecules; (vi) sequencing the second subset of library nucleic acid molecules and comparing the determined sequences to human reference sequences, thereby creating a second set of inferred information sequence variants (PISV2); (vii) analysing the inferred information sequence variants (PISV2) to diagnose, prognose, and control the response to the
drug against a specific
human disease state. Steps (i) to (iv) are also collectively referred to as step A. Step (v) to (vii) are also collectively referred to as Step B.