The present invention belongs to the field of electronic countermeasure technology, and discloses a method, system for individual identification of communication radiation sources based on time-frequency filter coefficient fusion. The method includes: using a constant modulus algorithm in the time domain to perform equalization filtering on the transmitted signal carrying the radiation source fingerprint, extracting the equalizer coefficients after equalization convergence; converting the equalized, filtered signal to the frequency domain, applying a Mel filter bank to perform homomorphic filtering on the signal in the frequency domain to obtain the filtered Mel filter coefficients; performing frame-wise convolution on the equalizer coefficients, the Mel filter coefficients to fuse the time-domain, frequency-domain features of the communication radiation source, extract the communication radiation source fingerprint; constructing an individual identification model for communication radiation sources; identifying, classifying the extracted communication radiation source fingerprint features based on the individual identification model for communication radiation sources.