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31 results about "Genetic correlation" patented technology

In multivariate quantitative genetics, a genetic correlation (denoted rg or rₐ) is the proportion of variance that two traits share due to genetic causes, the correlation between the genetic influences on a trait and the genetic influences on a different trait estimating the degree of pleiotropy or causal overlap. A genetic correlation of 0 implies that the genetic effects on one trait are independent of the other, while a correlation of 1 implies that all of the genetic influences on the two traits are identical.

System and method for cleaning noisy genetic data and determining chromosome copy number

Disclosed herein is a system and method for increasing the fidelity of measured genetic data, for making allele calls, and for determining the state of aneuploidy, in one or a small set of cells, or from fragmentary DNA, where a limited quantity of genetic data is available. Genetic material from the target individual is acquired, amplified and the genetic data is measured using known methods. Poorly or incorrectly measured base pairs, missing alleles and missing regions are reconstructed using expected similarities between the target genome and the genome of genetically related individuals. In accordance with one embodiment of the invention, incomplete genetic data from an embryonic cell are reconstructed at a plurality of loci using the more complete genetic data from a larger sample of diploid cells from one or both parents, with or without haploid genetic data from one or both parents. In another embodiment of the invention, the chromosome copy number can be determined from the measured genetic data of a single or small number of cells, with or without genetic information from one or both parents. In another embodiment of the invention, these determinations are made for the purpose of embryo selection in the context of in-vitro fertilization. In another embodiment of the invention, the genetic data can be reconstructed for the purposes of making phenotypic predictions.
Owner:NATERA

System and method for cleaning noisy genetic data and determining chromosome copy number

Disclosed herein is a system and method for increasing the fidelity of measured genetic data, for making allele calls, and for determining the state of aneuploidy, in one or a small set of cells, or from fragmentary DNA, where a limited quantity of genetic data is available. Poorly or incorrectly measured base pairs, missing alleles and missing regions are reconstructed using expected similarities between the target genome and the genome of genetically related individuals. In accordance with one embodiment, incomplete genetic data from an embryonic cell are reconstructed at a plurality of loci using the more complete genetic data from a larger sample of diploid cells from one or both parents, with or without haploid genetic data from one or both parents. In another embodiment, the chromosome copy number can be determined from the measured genetic data, with or without genetic information from one or both parents.
Owner:NATERA

System and method for cleaning noisy genetic data from target individuals using genetic data from genetically related individuals

ActiveUS20130253369A1Microbiological testing/measurementSurgeryCell-free fetal DNAFetal cell
A system and method for determining the genetic data for one or a small set of cells, or from fragmentary DNA, where a limited quantity of genetic data is available, are disclosed. Genetic data for the target individual is acquired and amplified using known methods, and poorly measured base pairs, missing alleles and missing regions are reconstructed using expected similarities between the target genome and the genome of genetically related subjects. In accordance with one embodiment of the invention, incomplete genetic data is acquired from embryonic cells, fetal cells, or cell-free fetal DNA isolated from the mother's blood, and the incomplete genetic data is reconstructed using the more complete genetic data from a larger sample diploid cells from one or both parents, with or without genetic data from haploid cells from one or both parents, and / or genetic data taken from other related individuals.
Owner:NATERA

High-throughput large-scale plant phenotyping instrumentation

Systems, methods, and apparatus for large scale, high throughput phenotyping of items including plants to derive environment / genetics correlations based on controlled variation of environment. Spatial and temporal resolution is improved by an integrated system that can use space efficiently yet concurrently process a large number of replicates but in varying environments. This is accomplished by using an array of miniature greenhouses, each in communication with one or more generators or regulators of an environmental factor that can be independently supplied and controlled to each miniature greenhouse. The controller also controls acquisition of data from each greenhouse as well as processing of that data into phenomic / genomic correlations.
Owner:IOWA STATE UNIV RES FOUND

Selection method for excellent individuals of Chinese firs

The invention discloses a selection method for excellent individuals of Chinese firs. The selection method is a mixed linear model method, utilizes a spatial analysis method for estimating a spatial residual variance and spatial autocorrelation, utilizes a restrictive maximum likelihood method for estimating a genetic variance, and utilizes best linear unbiased prediction for individual breeding value of the Chinese firs. The method analyzes genetic variation, genetic control and genetic correlation among characters for main economic characters such as tree height, diameter at breast height, wood basic density, micro fiber angle and the like of the Chinese fir, predicts the breeding value of each character for each individual of the Chinese firs, and according to a multi-character index selection formula of the Chinese fir, picks out individuals which are genetically excellent both in growth and wood property. According to the method, when the environmental impact is eliminated in generic parameter estimation, the multi-character index selection based on the breeding value can select the individuals with generically excellent comprehensive characters effectively, the accuracy is high, and the selected excellent individuals can serve as both the material for asexual reproduction of the Chinese firs and the breeding material for next-generation breeding population of the Chinese firs.
Owner:NANJING FORESTRY UNIV

System and method using clinical data to predict genetic relatedness for the efficient management and reduction of healthcare-associated infections

A method for identifying two or more infections as related or non-related infections based on an estimated genetic relatedness of the two or more infections, comprising: (i) receiving, for each of two or more infected patients, infection-relevant information comprising an antibiotic resistance profile for the patient's infection, a geo-temporal record for the patient, and a caregiver history for the patient; (ii) estimating, using a trained genetic relatedness model, a genetic relatedness of at least two of the two or more infections; (iii) comparing the estimated genetic relatedness between at least two of the two or more infections to a predetermined threshold; (iv) identifying, based on the comparison, the at least two of the two or more infections as a related infection or a non-related infection.
Owner:KONINKLJIJKE PHILIPS NV

Method for breeding new red rice variety by using medicinal wild rice

The invention provides a method for breeding a new red rice variety by using medicinal wild rice, and belongs to the technical field of rice breeding. The method for breeding the new red rice variety by using the medicinal wild rice comprises the following steps: introducing DNA of the medicinal wild rice into receptor rice, bagging before flowering of the receptor rice, harvesting seeds after maturation, planting the seeds in the current year, screening after heading to obtain excellent single plants, and subsequently planting twice every year, early planting is excellent single plants obtained by screening of late planting in the last year, late planting is excellent single plants obtained by screening of early planting in the current year, and so on until single plants with stable characters are obtained; the genetic correlation between a single plant with stable characters and the medicinal wild rice is verified by adopting an SSR marker, and if a specific DNA fragment of the medicinal wild rice is amplified from the single plant with stable characters and a corresponding fragment cannot be amplified from receptor rice, the breeding is successful. The method disclosed by the invention can be used for rapidly breeding a new red rice variety with medicinal wild rice gene polymerization.
Owner:海南省农业科学院粮食作物研究所

Breeding method and device for improving number of weaned piglets and medium

InactiveCN109197761AIncrease the effective sizeReduce invalid litter sizeAnimal husbandryGenetic correlationAnimal science
The invention discloses a breeding method and device for improving the number of weaned piglets and a medium, and relates to the technical field of pig breeding. The breeding method comprises the steps of determining evaluation standards suitable for a healthy piglet number character; obtaining the healthy piglet rate according to the healthy piglet number and the total number born; respectively determining estimated breeding values of the healthy piglet number and the healthy piglet rate, and carrying out standardization; respectively setting weighting weighted values of the healthy piglet number breeding value and the healthy piglet rate breeding value, taking the weighted sum of the standardized healthy piglet number breeding value and the standardized healthy piglet rate breeding valueas a selection index of a litter size character, and selecting maternal pig litter size characters according to the selection index. The breeding method explores the genetic correlation influences imposed by different birth weight selection standards on the piglet number and other breeding characters, simultaneously takes the healthy piglet number and the healthy piglet rate into breeding character selection indexes, and has the effects of reducing invalid piglet number, improving the valid piglet number and finally improving the number of weaned piglets.
Owner:WENS FOOD GRP CO LTD

Selection method for excellent individuals of Chinese firs

The invention discloses a selection method for excellent individuals of Chinese firs. The selection method is a mixed linear model method, utilizes a spatial analysis method for estimating a spatial residual variance and spatial autocorrelation, utilizes a restrictive maximum likelihood method for estimating a genetic variance, and utilizes best linear unbiased prediction for individual breeding value of the Chinese firs. The method analyzes genetic variation, genetic control and genetic correlation among characters for main economic characters such as tree height, diameter at breast height, wood basic density, micro fiber angle and the like of the Chinese fir, predicts the breeding value of each character for each individual of the Chinese firs, and according to a multi-character index selection formula of the Chinese fir, picks out individuals which are genetically excellent both in growth and wood property. According to the method, when the environmental impact is eliminated in generic parameter estimation, the multi-character index selection based on the breeding value can select the individuals with generically excellent comprehensive characters effectively, the accuracy is high, and the selected excellent individuals can serve as both the material for asexual reproduction of the Chinese firs and the breeding material for next-generation breeding population of the Chinese firs.
Owner:NANJING FORESTRY UNIV

A Serum Biochemical Marker for Assisted Screening of Low-fat Broilers and Its Application

The invention discloses a serum biochemical marker for auxiliary screening of low-fat broiler chicken and application of a serum biochemical marker, and belongs to the technical field of poultry genetic breeding. The serum biochemical marker disclosed by the invention is the level of HDL-C / LDL-C in chicken serum. The marker has significant difference in the low-fat broiler chicken and high-fat broiler chicken, also has high genetic correlation coefficient and hereditary capacity, and can be applied to identification of abdominal fat amount of the broiler chicken and breeding of the low-fat broiler chicken. In addition, the invention also provides the application and a screening method of the serum biochemical marker.
Owner:NORTHEAST AGRICULTURAL UNIVERSITY

Method for evaluating semen grade of Bashang long-tail breeder cock

The invention relates to a method for evaluating the semen grade of Bashang long-tail breeder cocks, the method comprises steps of respectively giving different weighted values according to the influence of sperm motility, sperm collection quantity and sperm concentration on cock breeder value, hen fertilization rate and hereditary characteristics of cocks, and synthesizing the weighted values into a breeder cock semen grade index, namely a breeder cock semen grade index, wherein the breeder cock semen grade index is equal to 58.42*semen collection quantity+78.55*sperm motility+1.48*sperm concentration, and evaluating the reproductive performance of the breeder cock according to the breeder cock semen grade index. Because the breeder cock semen grade index is in strong positive genetic correlation with the semen quality, the quality of the long-tailed breeding cock semen on the dam is judged according to the genetic correlation, selection and retention are judged, the quality of the semen is objectively evaluated, the selection accuracy and operability are improved, the quality of the breeding cock semen can be improved generation by generation according to the selection, the genetic progress of breeder cock selection is accelerated, so that the reproductive performance, the breeding value and the economic benefit of the long-tail chickens on the dam are improved.
Owner:HEBEI NORMAL UNIVERSITY OF SCIENCE AND TECHNOLOGY
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