The invention discloses a reconfigurable computing storage fusion flash memory control system which comprises a host interface, a flash memory medium interface, an embedded processor, a cache and storage controller, an on-chip FLASH, an NVSRAM and an embedded FPGA, and all hardware modules are mounted on an internal bus and communicate through the internal bus. And the embedded FPGA is used for calculating hardware acceleration of tasks, generating a bit stream file in a software environment and reburning the bit stream file, changing the internal structure of the embedded FPGA, arranging andwiring the embedded FPGA, realizing different functions and realizing a reconfigurable hardware acceleration function. The method solves the problems of bandwidth wall and high power consumption caused by separation of calculation and storage and the technical problem of chip tape-out function solidification, has the advantages of being programmable, flexible in design, capable of achieving onlineupgrading and secondary development and the like, and can achieve calculation in storage, reduce data movement and reduce power consumption; and the chip hardware is reconfigurable and supports realization of different functions.