The invention relates to the technical field of
genome information analysis, in particular to a local pig optimal
heterosis prediction method based on
genome information. According to the method, pure parents with clear genetic backgrounds are accurately identified and screened out by utilizing high-density SNP marker information covering a whole
genome, a
reference population is constructed, large-scale hybridization propagation is simulated, structured virtual
population data is formed, and multi-character
phenotype data of filial generations are standardized and weighted, so that the genetic backgrounds of the filial generations are optimized, and the genetic backgrounds of the filial generations are optimized. The method comprises the following steps of: dividing a plurality of characteristic groups such as a production performance type and a reproductive performance type, and analyzing the correlation between phenotypic deviation and
genotype in each group, so as to separate and quantify dominant effect caused by
heterozygous genotype and recessive effect caused by
homozygous genotype, construct explicit and recessive weight parameters, and determine the genetic relationship between the dominant effect and the recessive effect; finally, the non-additive effect parameters are superposed to a traditional additive breeding value model, direct quantitative prediction of
heterosis is achieved, and therefore the accuracy and efficiency of
hybrid combination matching are greatly improved.