The invention belongs to the technical field of lake water treatment, and discloses a lake water ecological restoration system. Restoration steps implemented by the lake water ecological restoration system include S1, replacing silt; S2, replacing water sources; S3, restoring the water sources; S4, treating ecospheres of lakes. The lake water ecological restoration system has the advantages that the content of organic matters in the silt is regulated for a long time and can be reduced, the water sources are extracted, disinfected and sterilized, and accordingly the visibility of the water sources can be guaranteed; beneficial indigenous microorganisms can be activated, growth and reproduction of the beneficial indigenous microorganisms can be promoted, growth of harmful microorganisms canbe inhibited, accordingly, ecological systems of water bodies can be restored, and sludge in the water bodies can be effectively reduced; environments of the water bodies can be improved, the problemsof lake eutrophication, black-odor and the like can be solved, destruction on the ecospheres during establishment at preliminary stages can be reduced, and excellent protection effects can be realized; the alga-plankton-fish ecospheres of the lakes are set, accordingly, the restoration capacity of ecological systems of the lakes can be effectively improved, and the external destruction resistancecan be improved.