The invention discloses a nanometer coordination polymer and a preparation method and application thereof. The nanometer coordination polymer comprises ditiocarb sodium, copper and a target ligand, the ditiocarb sodium and the copper form a polymer under the coordination effect, and the target ligand wraps the surface of the polymer under the electrostatic effect to form a core-shell structure. The preparation method of the nanometer coordination polymer comprises the steps that the ditiocarb sodium and a stabilizer are mixed to obtain a mixed solution, CuCl2 is dropwise added into the mixturethrough a constant flow pump, and a polymer is obtained; the target ligand is prepared into a solution, the solution is dropwise added into the polymer through the constant flow pump, and through stirring, the nanometer coordination polymer is obtained. According to the nanometer coordination polymer, poly-ubiquitinated protein accumulation can be caused, protein can be degraded and damaged, andthe p97 channel can be interfered, finally cell apoptosis is induced, and the nanometer coordination polymer can be applied to preparation of target apoptosis-promoting medicines for malignant tumor cells.