The invention discloses an informatization management method and system for preventing implicit loading of an aircraft, wherein the method comprises the steps: s10, calibrating a wagon balance, and enabling the wagon balance to be connected with a freight system; s20, weighing the waybill by a wagon balance, recording the collection and transportation weight of the waybill, and inputting the collection and transportation weight into a freight transport system; s30, splitting, combining or not processing the waybill to generate a corresponding cargo card, then forming the mapping relation between the waybill and the cargo card, operating the wagon balance to weigh the cargo card, recording the heavy weight of the cargo card, inputting the heavy weight into the freight system, and checking the receiving and transporting weight and the heavy weight in real time, and then comparing the errors of the collection and transportation weight and the re-weighing weight to obtain a weight error value, and if the weight error value exceeds a set threshold value, performing re-checking deviation warning; s40, providing an electronic installation sheet, simulating cargo card installation, monitoring ton control matching and installation load limiting on the electronic installation sheet, and generating an electronic installation shipping sheet. According to the method, various potential and known risks of implicit loading can be avoided, and the installation accuracy is guaranteed.