The invention discloses a sampling value multi-interface synchronizing system based on IEEE1588, which is characterized by comprising a universal IEEE1588 clock interface and a universal multi-sampling value synchronizing interface, wherein the universal IEEE1588 clock interface is a communication receiving module provided with a plurality of IEEE1588 slave clock interfaces, and the number of theslave clocks can be automatically expanded according to the number of master clocks; and the universal multi-sampling value synchronizing interface is a communication interface which can form internetworking connection with merging units and comprises an Ethernet data receiving module, a software sampling and interpolating module, a phase-locked loop (PLL) module, a frequency tracking module and a multi-interface sampling value synchronizing module. The system of the invention can be used for electronic equipment requiring sampling synchronization, such as a digital protective relay device, an electric energy meter, an electric energy quality monitoring device and the like, thereby providing a convenient solution for the problem that the sampling value internetworking transmission in the prior art depends on the global sampling synchronous source.