The invention discloses an integrated water resource management system in an irrigation area. The management system comprises an early warning module, a data display module, a water transfer management module, a gate group dispatching module, a water regime statistics module, a project patrol module and a drought prevention and flood fighting module; The data display module is based on the GIS platform, integrates the gate operation monitoring data, the pump station operation monitoring data, the alarm information, the video monitoring display and the dam safety monitoring data, and displays the same data through the GIS platform. The data display module comprises a GIS map module, a river basin GIS map provided by a regional water conservancy bureau is used, and on the basis of this, mainhydraulic structures, river courses, channels, survey points and irrigation districts are marked; A layered and hierarchical overlay display map layer in that data display module. The invention realizes the comprehensive management of water resources dispatching, decision-making command, water use management, video monitoring, engineering management, dam safety, flood control and drought resistance in irrigation districts.