The invention discloses a fluorescence detection kit based on an aptamer. The fluorescence detection kit comprises exonuclease III, a reaction buffer solution, DNA1, DNA2 and stem-loop structure nucleic acid H1. The aptamer is used for specific recognition of a molecular recognition element, a 3' double-chain nucleic acid structure with a flush end is obtained, and circular signal amplification isperformed after exonuclease III is added, so that a large amount of double-chain DNA become single-chain DNA; after fluorescent dye is added, the content of to-be-detected molecules is detected by distinguishing fluorescence intensity change. The linear range for malathion detection is 10 pM to 100 nM, and the limit of detection is 5 pM; meanwhile, the detection system has good specificity and the detection results cannot be interfered by other common analogues. No separation and purification processes are required in the detection process, the kit can be used for detection after simple mixing, has the advantages of being simple to operate, low in cost, rapid in response and the like and can be used for rapid and high-sensitivity detection of pesticide residues in food, water sources, soil and other samples.