The invention discloses an establishment method for an FMRI brain activation data warehouse. The method comprises the step that the establishment method for an FMRI data warehouse model is designed based on the mining function of the FMRI data warehouse model. The new technology is introduced, secondary analysis, processing and integration are performed on data, so that a new law is found, the deep mechanism of advanced brain activities is disclosed, and existing scattered brain function imaging data and results can be applied orderly. With the continuous development and improvement of the data warehouse, the services should also break through the management and decision-making range to extend towards other fields. In the face of the new requirements of brain function imaging studying, all the multiple functions, such as deep data mining, multi-dimensional analysis, dynamic inquiry and the like, of the data warehouse can be used as powerful tools, and a brand-new method is provided for brain function imaging studying.