The invention discloses a pecan-milk compound protein beverage and a processing method thereof. The pecan-milk compound protein beverage is characterized by comprising the following raw materials: pecan kernels, whole milk powder, a compound stabilizer, white granulated sugar, concentrated jujube juice, edible salt, starch, sodium caseinate, sodium tripolyphosphate, sodium citrate, trichlorosucrose, sodium hydrogen carbonate, edible essence and water. The processing method comprises the following steps: screening, rinsing, finely grinding, dissolving milk powder, dissolving white granulated sugar, dissolving ingredients, blending with the jujube juice, homogenizing, sterilizing, filling and sterilizing. The pecan-milk compound protein beverage has a peculiar fragrance of pecans and rich nutrition of the whole milk powder, has a unique milk red color of a pecan beverage, and has good color, fragrance and taste; the pecans and the milk powder are mixed in one beverage product, so that the pecan-milk compound protein beverage is more balanced in nutrition and has a gentle mouth feel at the same time.