The invention relates to the technical field of computational
toxicology, and discloses a method for calculating combination of perfluorinated and polyfluorinated
alkyl compounds and PPARalpha based on a
pharmacophore model, which comprises the following steps: acquiring a PFAS initial
data set, acquiring a PPARalpha
ligand binding domain crystal structure, and optimizing the structure; selecting representative PFAS to carry out molecular docking, and carrying out
simulated annealing optimization to obtain an optimal binding posture; then generating a
pharmacophore model; the models are screened; performing rigid fitting screening by using a
pharmacophore model; carrying out
molecular dynamics simulation on the representative hit object, and verifying the stability;
protein is extracted by culturing cells
in vitro, a
thermal displacement experiment is carried out, and the
thermal stability effect of PFAS on PPARalpha is verified. According to the method, comprehensive
virtual screening of PFAS-PPAR alpha interaction based on pharmacophores is provided, a calculation framework based on
protein and compound structures is established, and the method is suitable for environmental
pollutant screening and
safer chemical design.