The invention discloses an automatic access control system based on mobile phone Bluetooth communication and an implementation method thereof. The automatic access control system comprises an access controller mounted at an entrance, a mobile phone, an access control program, a remote management server and the like, wherein a Bluetooth communication module, a data processing unit and a relay control circuit are arranged in the access controller; after the mobile phone of a user is equipped with the access control program, the user can obtain authorization and key information provided by the management server according to the user identity; when the user is located near the Bluetooth access controller, the mobile phone and the access controller are communicated through a Bluetooth signal; the Bluetooth access controller judges whether the door can be opened according to communication content, if the door can be opened, the access controller controls a relay to open the door automatically, or a door opening switch is activated, and the relay can be controlled to open the door once the user presses the switch; and if the communication content is inconsistent with the setting of the Bluetooth access controller, no reaction is performed. Therefore, the door is opened without operation, and convenience is provided for the user.