The invention discloses an antenna control system, a ground control terminal and a control method thereof. The antenna control system comprises a controller, a positioning module, a signal transceiver, an antenna switching module, a tracking antenna and an omnidirectional antenna. Under control of the controller, a directional antenna realizes real-time tracking on an aircraft. The omnidirectionalantenna or the directional antenna is switched according to the real-time relative distance between the antenna control system and the aircraft; when the real-time relative distance is smaller than apreset threshold, the omnidirectional antenna is switched to be used; when the real-time relative distance is larger than the preset threshold, the directional antenna is switched to be used; the directional antenna is maneuverable, the large forward gain of the directional antenna can be fully exerted, the omnidirectional antenna and a tracking antenna are integrated, the communication stabilityat any distance and mutual interference resistance can be ensured, the expansion is strong, and the communication quality between the aircraft and the ground control terminal in the complete processof take-off, flight and landing can be ensured.