The invention belongs to the technical field of ecological restoration and particularly relates to a water body ecological restoration method. The water body ecological restoration method comprises the steps that the water surface is cleaned, then submerged plants, emergent aquatic plants and floating-leaved plants are planted, and aquatic animals are put in. According to the water body ecological restoration method, sludge at the water bottom is treated with a plant blanket in-situ coverage method, root systems of the emergent aquatic plants are fixed with pollution-free clay, and a putting-in type planting method is adopted for the floating-leaved plants and the emergent aquatic plants. The aqueous plants can provide an adhesion symbiotic space for microorganisms, and provide a food source for aqueous animals, fish and shellfish are put in when the aquatic plants grow stably, and a rapid and simple water body forest system is formed. By means of the water body ecological restoration method, the effects of fixing sludge at the water bottom, restoring the natural ecological environment and maintaining the water to be clear permanently can be achieved; meanwhile, a dwelling site can be provided for fish and birds, and certain river landscape can be formed.