The invention relates to a method for the auxiliary identification of comma bacillus by matrix-assisted laser desorption ionisation-time-of-flight mass spectrometry (MALDI-TOF MS). The method comprises the following steps of: 1, selecting 40 to 45 plants of fresh comma bacillus cultures, and pretreating the samples; 2, collecting maps of all bacterial strain samples; 3, analyzing and unitizing the obtained maps by using BioTyper software to obtain a comma bacillus standard map; 4, preparing samples of microbes to be detected by the step 1; 5, collecting MALDI-TOF MS maps of the samples to be detected according to the step 2; and 6, comparing the MALDI-TOF MS maps, which are obtained in the step 5, of the samples to be detected with the comma bacillus standard map, and determining a detection result according to matching fractions. By the method, a comma bacillus identification mass spectrogram database and the comma bacillus standard map are established successfully, so the simple, convenient, microscale, supermatic and accurate identification of the comma bacillus can be realized.