The invention discloses a multi-frequency ultrasonic stimulator, and particularly relates to the field of multi-frequency ultrasonic stimulators, the multi-frequency ultrasonic stimulator comprises awater tank and a generator mechanism, the generator mechanism is movably arranged in the water tank, the bottom of the generator mechanism is movably provided with a needle type hydrophone, and the top of the water tank is fixedly provided with a control box; the generator mechanism comprises an ultrasonic transducer and an animal skull, the animal skull is located at the bottom of the ultrasonictransducer, a water bag and a probe are fixedly arranged at the bottom of the ultrasonic transducer, and the probe is located in the water bag; an interactive interface, a signal control module, a parameter control module, a signal source, a power amplifier and an impedance matcher are installed in the control box, the signal control module, the parameter control module and the signal source are all connected to the connecting end of the interactive interface, and the power amplifier is connected to the connecting end of the signal source. The test range is large, test data is direct and accurate, and better test performance and control operation performance are achieved.