The invention discloses a balloon catheter for partially blocking blood flow. The balloon catheter comprises a catheter seat and a catheter body mounted at the catheter seat, wherein a plurality of balloons are arranged on a far-end segment of the catheter body, a main hole channel and a plurality of side hole channels are formed in the catheter body, the main hole channel axially extends, and theside hole channels are isolated from another; and a main pipe and a plurality of side pipes are correspondingly arranged on the catheter seat, and the multiple side hole channels respectively communicate to different balloons and are used for respectively controlling inflation states of the multiple balloons. By inflating the multiple balloons, near-end blood vessels of a thrombus are effectivelysealed, blocked and protected to different degrees, so that early perfusion of a lot of blood flow is reduced after acute stroke is dredged, and reperfusion injury complications are reduced; by adjusting the inflation states of the multiple balloons, multi-level accurate adjustment of the sealing states of blood vessels is realized, so that accurate control of perfusion blood flow is realized, and functional recovery of the brain is promoted; and manifold auxiliary instruments do not need to be used, and blood flow retardant radiography evaluation, short-term pipe flushing and liquid perfusion during operations can be realized by virtue of the single instrument.