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30 results about "Functional profiling" patented technology

Linking gene sequence to gene function by three dimesional (3D) protein structure determination

The present invention provides a structure-functional analysis engine for the high-throughput determination of the biochemical function of proteins or protein domains of unknown function. The present invention uses bioinformatics, molecular biology and nuclear magnetic resonance tools for the rapid and automated determination of the three-dimensional structures of proteins and protein domains.
Owner:RUTGERS THE STATE UNIV

Molecular and functional profiling using a cellular microarray

InactiveUS20060019235A1Faster and efficient predictionReward for identificationMicrobiological testing/measurementMaterial analysisCell–cell interactionFunctional profiling
Cells are profiled with respect to their expression of cell surface molecules, and ability to respond to external stimulus in the microenvironment. External stimuli include cell-cell interactions, response to factors, and the like. The cells are arrayed on a planar or three-dimensional substrate through binding to immobilized or partially diffused probes. Probes of interest include specific binding partners for cell surface molecules, signaling cues that act to regulate cell responses, differentiation factors, etc., which may be arrayed as one or a combination of molecules.
Owner:THE BOARD OF TRUSTEES OF THE LELAND STANFORD JUNIOR UNIV

Focused Libraries, Functional Profiling, Laser Selex, and Deselex

Focused aptamer libraries are constructed in accordance with a proteome (i.e., complex mixture of native biomolecules). The libraries may be screened to identify one or more candidate aptamers with desired biological activities other than specific binding to a target. Aptamers which are selected or derivatives thereof may be used for those specific activities in biological systems. Any combination of deconvoluting a focused library (functional profiling), increasing frequencies of particular aptamers in a focused library (Laser SELEX), and decreasing frequencies of particular aptamers in a focused library (DeSELEX) may be performed prior to assaying biological activity.
Owner:DUKE UNIV

Method and system for discovering and integrating rectal cancer related genes by utilizing public data resources and analyzing functions of rectal cancer related genes, and application

The invention discloses a method and a system for discovering and integrating rectal cancer related genes by utilizing public data resources and analyzing functions of the rectal cancer related genes, and an application. Based on the public data resources, open big data resources and diversified bioinformatics analysis means are reasonably used for performing analysis processing on mRNA expression data, and important genes related to complex diseases and functions of the important genes are identified. The method comprises the steps of sample data downloading and management; gene expression data analysis; difference expression gene screening; and gene function analysis and protein interaction analysis. According to the method and the system, the problems of weakness in integrating existing network resources, unfamiliarity with mRNA related most common databases and frontal analysis methods, incapability of independently finishing mRNA expression spectrum related bioinformatics analysis and the like can be solved; a plurality of risk pathways and genes related to the complex diseases such as the rectal cancer and the like can be discovered; and the method and the system are of important significance for biological targeted treatment of the complex diseases, biological drug research and development, pathogenesis explanation and risk prediction.
Owner:SOUTHEAST UNIV

Method for constructing object by stacking up functional feature

The present invention discloses a method for constructing an object by stacking up functional features thereof. The present invention is also exemplified with a drawing die. Functional features and their main control parameters can be identified through functional analysis, functional decomposition and geometric analysis. In the present invention, a design knowledge base, a functional feature library, a functional feature module and a graphic user interface can be utilized optionally. Moreover, the present invention can be implemented on the Windows XP system through a commercial CAD software and an API.
Owner:NAT KAOHSIUNG UNIV OF SCI & TECH

Analysis method of urban ecosystem

InactiveCN101908197AReflect rich contentClearly show the basic structureData processing applicationsEnvironmental resource managementFunctional profiling
The invention belongs to the field of environmental science research, in particular to a synthetic systems analysis method for evaluating an urban ecosystem. Aiming at the problems that the internal construction and the functions of the urban ecosystem can not be effectively analyzed and evaluated and subjectivity and discreteness can not be avoided by using a traditional method, the invention integrates the prior arts, such as an urban compound biological system theory, material flow accounting, biological network analysis, mathematical statistics simulation analysis, and the like into a whole. The method for simulating, estimating and analyzing the urban ecosystem comprises the following contents, such as system definition, biological network model construction, structure and function analysis, and the like. The method is suitable for analyzing the structure and the functions of the urban ecosystem, and comprehensively estimating the operation conditions of the urban ecosystem, and can be popularized in other complicated systems, such as an industry system, a consumption system and single factor systems of energy resources, water and the like.
Owner:BEIJING NORMAL UNIVERSITY

Screening method for genes of brewing yeast

Provided herein are a method for selecting a gene participating in the desired brewing character and compiling a database of the whole genome sequence of industrial yeast; identifying a gene participating in a brewing characteristic from the database; functional analysis of the gene; and a DNA array of the whole genome sequences of an industrial yeast. Also provided are a method for yeast breeding; a method of producing an alcoholic beverage with improved quality; and a screening method to identify genes that increase productivity and / or improve flavor in the production of an alcohol or an alcoholic beverage by (A) analyzing a whole industrial yeast genome sequence, (B) comparing the genome sequence with the genome sequence of S. cerevisiae, (C) selecting a gene of the industrial yeast encoding having 70 to 97% identity to an amino acid sequence of S. cerevisiae; and (D) analyzing the selected gene.
Owner:SUNTORY HLDG LTD

Kit for detecting cancer radiosensitivity and application of kit

ActiveCN109781985ARealize precise treatmentMaterial analysisTolerance inductionClinical efficacy
The invention relates to a kit for detecting cancer radiosensitivity and application of the kit to curative effect prediction. According to the kit of the invention, the screening of molecular markersis completely based on whole-genome RNAi library screening which is a more practical and effective screening mode in international research level. Identification is carried out step by step in vitroand vivo based on a radiotherapy tolerance induction process; it is finally found that RFC4 is a gene highly correlated with radiotherapy tolerance of colorectal cancer; clinical retrospective analysis and in-vitro and in-vivo functional analysis are performed on the identified RFC4 gene, it is revealed that the high expression levels of the RFC4 gene can be positively correlated with tumor regression bad performance, and the RFC4 gene can be used to predict radiotherapy tolerance / sensitivity. Based on the above technical schemes of the invention, the kit used for predicting the efficacy of local advanced neoadjuvant radiotherapy is obtained, and is of great realistic significance for solving the problem of differences between individuals in clinical efficacies and the prediction blanks ofregression / prognosis effects, and better achieving accurate treatment.
Owner:SUN YAT SEN UNIV CANCER CENT

Methods for functional analysis of high-throughput experimental data and gene groups identified therefrom

The present invention relates generally to groups of genes that can be used to diagnose and differentiate between types of specific diseases such as breast cancer. The groups of genes can be further used to develop diagnostic kits for the specific diseases. The diagnostic kits can also differentiate between sub-categories of a disease to help identify the appropriate treatment regimen for a patient.
Owner:CAMELOT UK BIDCO LTD

Functionality Analysis Method and Apparatus for Given 3D Models

The present invention provides a functionality analysis method and apparatus of given 3D models. This functionality analysis method comprises: computing interaction context for the central object given in each scene; building the correspondence among those scenes based on the computed interaction context; extracting the functional patches on each central object in each scene based on the built correspondence, and forming a set of proto-patches which is a key component of the functionality model; computing a set of geometric features on the sampled points on each consisting functional patch for each proto-patch; learning a regression model from the geometric features on sample points to their weights for each proto-patch; computing the unary and binary features of each functional patch; and refining the feature combination weights to get the final functionality model. This invention doesn't rely on the interaction between human and the central object and can handle any static interaction between all kinds of objects; without complex operations like labeling all the dataset, users can get the corresponding results directly.
Owner:SHENZHEN UNIV

Radix isatidis protein identification method

The invention discloses a radix isatidis protein identification method. The method includes: after radix isatidis is subjected to a series of pretreatment steps including grinding, decolorizing, splitting, enzyme digestion and the like, adopting a nanoliter liquid chromatograph / mass spectrometer for separation and mass spectrometric analysis, and adopting Mascot software for database retrieval and searching; subjecting identified proteins to functional annotation and pathway annotation by bioinformatics. The method is high in protein extraction rate and large in quantity of identified protein types, and in radix isatidis proteins, 1116 types of proteins and2589 unique peptide segments are identified, and the total number of high-reliability proteins (with unique peptide sequence matching numbers larger than or equal to 2) is 742 and accounts for 66.49%. The method is suitable for identification and functional analysis of proteins in traditional Chinese medicines such as radix isatidis and has a promising application prospect.
Owner:NANJING UNIVERSITY OF TRADITIONAL CHINESE MEDICINE

Arrays and Methods for Reverse Genetic Functional Analysis

Provided are methods, kits and arrays for carrying out relative measurement of an analyte of interest in a biological sample. As specifically exemplified, there is an array of stabilized, desiccated cDNA preparations, each at a defined location within the array, where those cDNAs were prepared from cells treated with a particular condition believed to modulate at least one gene of interest. Detection can be via Real Time Polymerase Chain Reaction using an appropriate reaction mixture and primers specific for a coding sequence of interest, and a greater relative amount of a RT PCR product from a control preparation reflects greater gene expression in response to the test condition whereas a lower amount of RT PCR product reflects an inhibitory effect on expression of the coding sequence of interest as a result of the application of the test condition.
Owner:SABIOSCIENCES CORP

Internet-based microbial limit inspection system and method

The invention belongs to the technical field of microbial limit inspection. The invention discloses an internet-based microbial limit inspection system and method. The internet-based microbial limit inspection system comprises an environment cleanliness detection module, a microbial species detection module, a main control module, a network communication module, a microbial function analysis module, a safety evaluation module and a display module. Through the microbial function analysis module, the procedure of analyzing microbial population functions is simplified, and the time is saved; according to the method for analyzing the microbial population function by utilizing the metagenome data, the splicing and prediction processes of sequencing reads are removed, and the function annotation of genes does not need to be carried out by comparing with a conventional single-function database, so that the data analysis time is greatly saved, and the running speed of the whole sequencing data analysis process is increased; and meanwhile, the microorganism safety level can be accurately evaluated through the safety evaluation module.
Owner:JIANGSU SUPERVISION & INSPECTION INST FOR PROD QUALITY

Osteoarthritis related gene screening and function analysis method

The invention discloses an osteoarthritis related gene screening and function analysis method, which comprises the following steps: searching an osteoarthritis related gene expression chip result from a GEO database, and obtaining a gene expression result; searching the same differential genes in the data sets of the two chips by utilizing a Venn graph; and carrying out gene enrichment function analysis by utilizing a bioinformatics technology. According to the method, expression difference genes are downloaded by utilizing multiple online databases, genes for co-expression difference in two chip data sets are searched, bioinformatics analysis is carried out on the co-expression difference genes, and meaningful exploration and basis are provided for osteoarthritis synovial tissue related marker screening, molecular pathogenesis and the like.
Owner:BEIJING AEGLESSTEM TECH CO LTD

Anti-tag antibody chip for protein interaction analysis

It is an object of the present invention to conduct function analysis of proteins arranged with high density on a solid phase in a high-throughput manner, regardless of protein varieties. The present invention is characterized in that it immobilizes target proteins on a substrate while maintaining the structures and the functions thereof, and that it carries out interaction analysis of such proteins. For example, target proteins are prepared in a state where one end of each protein is fused to a peptide as a tag or to a polypeptide by genetic engineering methods. Then, the target proteins are bonded to the substrate via a layer formed thereon, comprising anti-tag antibodies. The target proteins are arrayed while they are maintained in a liberated state on a solid phase, and the interaction analysis is carried out. According to the present invention, the interaction analysis of target proteins can be carried out without affecting the unstable structures and the functions thereof. For example, the present invention can be applied as a platform for interaction analysis, screening, quantitation, expression profiling, or the like, regarding proteins.
Owner:HITACHI HIGH-TECH CORP

A Tolerance Modeling and Analysis Method of Circuit System Based on Response Surface Method

ActiveCN110135090BAccurately establish quantitative relationshipsPrediction results are real and reliableDesign optimisation/simulationSpecial data processing applicationsAlgorithmData space
The present invention provides a circuit system tolerance modeling and analysis method based on the response surface method, which includes S1, structure and function analysis, obtaining the nominal value of each component parameter and constructing a circuit system simulation model; S2, analyzing the component parameters Random sampling, building component parameter sample space; S3, calling SPICE tool for simulation, and recording simulation data; S4, building simulation data space, and dividing it into two subspaces: sample space for model fitting and sample space for model checking ; S5, using the data in the sample space for regression fitting of the least squares method to obtain the response surface model; S6, using the sample space for testing to test and fit the response surface model; S7, finding the first-order partial for the response surface model Guide to determine the ranking of the influence of components on tolerance. The method of the invention is based on the calculation result of Monte Carlo simulation, and guides the tolerance design of the circuit system by constructing the response surface model of the characteristic parameters of the circuit system, thereby improving the consistency level of the circuit system.
Owner:BEIHANG UNIV +1

A Configuration Synthesis Method of Metamorphic Mechanism Based on Functional Analysis

The invention relates to a metamorphic mechanism configuration synthesis method based on functional analysis. The method includes: decomposing a work task of a mechanism to acquire degree of freedom that the mechanism needs to have at each stage; performing aggregation operation to acquire number and type of degree of freedom of a metamorphic source mechanism; synthesizing according to a conventional mechanism synthesis method to acquire various possible configurations of the metamorphic source mechanism; screening according to configuration transformation requirements of the metamorphic process to acquire a good metamorphic source mechanism original configuration; integrating kinematic pairs in the original configuration to acquire a metamorphic kinematic pair and the metamorphic source mechanism; combining the metamorphic source mechanism with each working stage to acquire each configuration of the metamorphic mechanism, and using a metamorphic equation to describe the metamorphic process between the metamorphic source mechanism and each working stage mechanism as well as between each two adjacent working stage mechanisms.
Owner:XIAN UNIV OF SCI & TECH

A Deep Bottleneck Feature Extraction Method of Cardiac Shock Signal Based on Deep Neural Network

ActiveCN108256457BImproving Cardiac Functional Characterization PerformanceImprove robustnessCharacter and pattern recognitionNeural architecturesEcg signalFeature extraction
The invention relates to the technical field of biological feature extraction, and is a method for extracting deep bottleneck features of heart shock signals based on deep neural networks. The heart shock signal is used as the feature extraction object, and its waveform amplitude is weak and easily subject to external interference. Synchronously collected ECG signals, using the deep neural network to mine the mechanism of deep features, and extract its deep bottleneck feature parameters. This feature uses the cardiac shock signal as the input vector, and the synchronous ECG signal as the target vector. It is trained through a pre-designed 9-layer neural network to obtain deep bottleneck features and realize the organic combination of cardiac dynamic performance and electrophysiological features. This feature takes cardiac shock signals and ECG signals, which are easier to obtain in daily life, as the research object. It can not only overcome the dependence of conventional waveform characteristic parameters on waveform fluctuations, but also improve the representation performance of a single characteristic parameter. It is an application of deep learning. A new attempt to theoretically conduct daily cardiac function analysis.
Owner:NORTHEASTERN UNIV LIAONING

A method for gene quantitative analysis

The invention discloses a method for gene quantitative analysis. The method comprises the following steps: (1) preparing an initial sample, processing cells by virtue of a protein decomposition enzyme, and conducting related gene pre-amplification; (2) implementing a quantitative PCR test by virtue of an amplified gene template, and detecting the initial copy number of related genes, so as to obtain original CT data, namely a CT value; (3) in accordance with a quantitative PCR instrument and a reagent, setting the maximum reliable CT limit value, called maxCT value for short; (4) converting the obtained CT value into eCT in accordance with a computation formula: eCT=maxCT-CT; and (5) in accordance with the obtained eCT, conducting quantitative analysis and comparison on gene expression andgene copy number of single cells or a few of cells, so as to obtain single-cell related gene quantitative data which is applied to science and clinical diagnosis information such as cell functional analysis, qualitative distinction, source identification and the like. The method is simple and easy to implement and is direct; and detection results are more real and clearer and are more conducive to clear comparison, so that a better cell qualification and classification effect can be achieved.
Owner:宜昌美光硅谷生命科技股份有限公司

Bond performance attribution method and device

The invention relates to the technical field of data processing, provides a bond performance attribution method and device, and is used for solving the problem of inaccurate performance attribution in the prior art. According to the invention, the method comprises the steps of acquiring bond parameters and instant interest rate curve data of a position bond, the bond parameters of the position bond comprising convexity of the position bond; according to bond parameters of the position bond, the instant interest rate curve data and a performance attribution model, and obtaining attribution parameters corresponding to one or more attribution items of the position bond, wherein the one or more attribution items comprise a convexity effect; and according to the attribution parameters corresponding to the one or more attribution items, providing performance function analysis of the position bond for a user.
Owner:CCB FINTECH CO LTD

Technical system problem mining and innovation path selecting method

The invention relates to the field of science and technology information analysis, in particular to a technical system problem mining and innovation path selection method, which is characterized by comprising the following steps: step 1, function analysis; 2, analyzing a functional technology system; 3, listing performance parameters; 4, evaluating the ideal degree of the performance parameters; 5, determining an optimal ideal state of the performance parameters, and determining an innovation benchmark; step 6, component parameter analysis; 7, problem mining; step 8-1, resource analysis; and step 8-2: component evolution. According to the method, the current system performance parameters are mined, the ideal degree of the performance parameters is defined, the evolution route of the performance parameters is combined, the stage of the current system parameters and the next stage of evolution of the system parameters are determined according to the evolution trend of the performance parameters, and then the innovation path is selected; and then finding out problems generated during coordinated change of parameters in the system, and solving the problems in combination with component resource analysis and component evolution so as to promote evolution of the system.
Owner:安徽冠东科技有限公司

Method for identifying pedigree-specific amplified gene family

The invention belongs to the technical field of biological information analysis, and provides a method for identifying a pedigree specific amplification gene family. The invention relates to a method for screening and identifying pedigree specific amplification genes appearing in different subfamilies by utilizing orthologous homology analysis. The method is easy to operate, the required data volume is small, analysis software operation is easy to learn, the screened genes have good representativeness, and a foundation is laid for wide-range identification and functional analysis of pedigree specific genes in the future.
Owner:NANJING AGRICULTURAL UNIVERSITY

Signal path PCR chip data analysis system, local computer equipment and cloud platform

The invention provides a signal path PCR chip data analysis system, local computer equipment and a cloud platform. Through an original Ct value file, a chip layout file, a grouping file and a group comparison file of a signal path PCR chip and set personalized parameters, the data of the PCR chip is automatically subjected to standardization, statistical analysis, visualization and functional analysis, and a report result is finally generated. Statistical analysis and visualization results can be directly used for article publishing, biomedical detection reports and the like.
Owner:SHANGHAI BIOCHIP

Neuropeptide receptor screening method

The invention discloses a neuropeptide receptor screening method. According to the principle of statistics, the genomic sequencing result P after FDR correction is required to be less than 0.05 and the selection basis of the gene differential expression multiple is that the effect intensity generated by ligand-receptor binding is in direct proportion to the quantity of occupied receptors; a protein model is established by adopting protein homologous modeling technologies; and three most comprehensive homologous modeling technologies such as SWISS-MODEL, MODELLER and PHYRE2 in an evaluation system are comprehensively applied, so that the problem of low model quality caused by single modelling technology is avoided. According to the neuropeptide receptor screening method, the setting requirements of technical parameters are clear and the docking areas are precise in the molecular docking process; after the docking succeeds, the docking needs to be optimized through geometric matching and a molecular dynamics method; through interaction, critical evaluation and molecular force field evaluation functions are predicted to obtain a docking complex score; and through the verification of the comprehensive expression quantity and the analysis of the molecular characteristics and functions of the neuropeptide receptors, the candidate receptors are determined.
Owner:SHANXI AGRI UNIV

High-throughput functional analysis of gene expression

The invention is directed to an in vivo functional genomics screen for extracting functional information from a global gene expression profiling dataset in a high-throughput manner.
Owner:RGT UNIV OF MINNESOTA

A system for discovering and integrating rectal cancer-related genes and their functional analysis

The invention discloses a method and a system for discovering and integrating rectal cancer related genes by utilizing public data resources and analyzing functions of the rectal cancer related genes, and an application. Based on the public data resources, open big data resources and diversified bioinformatics analysis means are reasonably used for performing analysis processing on mRNA expression data, and important genes related to complex diseases and functions of the important genes are identified. The method comprises the steps of sample data downloading and management; gene expression data analysis; difference expression gene screening; and gene function analysis and protein interaction analysis. According to the method and the system, the problems of weakness in integrating existing network resources, unfamiliarity with mRNA related most common databases and frontal analysis methods, incapability of independently finishing mRNA expression spectrum related bioinformatics analysis and the like can be solved; a plurality of risk pathways and genes related to the complex diseases such as the rectal cancer and the like can be discovered; and the method and the system are of important significance for biological targeted treatment of the complex diseases, biological drug research and development, pathogenesis explanation and risk prediction.
Owner:SOUTHEAST UNIV
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