The invention relates to the technical field of fermentation yeast screening genes, and discloses an experimental method of a yeast two-hybrid screening polypeptide library, which comprises the following steps: preparation of materials: bait clone pGBKT7-gA9-nosc-221, a bait carrier pGBKT7, library yeast plasmid pGADT7-polypeptide cDNA, a Clontech yeast two-hybrid system and a culture medium are prepared; the culture medium is prepared from an escherichia coli culture medium, a yeast complete culture medium, a yeast defect type screening culture medium and other stock solutions. The method specifically comprises the following steps: transforming bait plasmids into recipient bacteria AH109, carrying out self-activation detection on the bait plasmids, carrying out library screening, carrying out yeast positive clone identification and sequencing comparison, carrying out yeast positive clone rotation verification, screening a yeast two-hybrid polypeptide library by taking a gA9-nosc-221 gene constructed on a pGBKT7 vector as bait, and carrying out multiple report gene detection, DNA sequencing and BLAST comparative analysis on the positive clone, so as to obtain the yeast two-hybrid polypeptide library. According to the method, the polypeptide interacting with the pGBKT7-gA9-nosc-221 is determined, the method for determining the polypeptide protein is more efficient, and the research efficiency is greatly improved.