The invention discloses a jacking pipe cutting protective structure for building remains and a construction method thereof. The protective structure comprises an earthwork foundation, a migration body, a box-shaped protective system and a hoisting base, and the box-shaped protective system comprises steel plate protective barrels and protective barrel keels; and the hoisting base comprises steel pipe curtains and opening locking steel beams, the opening locking steel beams and the steel pipe curtains are connected to form a whole, and the hoisting base is provided with hanging point structuresfor allowing hoisting ropes to be connected. The construction method of the protective structure comprises the steps of layered excavation of earthwork, pre-reinforcing of the migration body, lateralreinforcing, earthwork foundation construction, surrounding basement treatment, erection of a jack jacking pipe device, jacking trying, steel pipe marching, butting-joint of steel pipes, jacking andpenetrating through of a soil body, connection of the steel pipes and the opening locking steel beams, hoisting point setting, hoisting and the like. According to the jacking pipe cutting protective structure for the building remains and the construction method thereof, site arrangement is easy, the construction progress is quick, interference factors are less, civilized construction is facilitated, various resources can be well utilized, it can be ensured that surrounding existing facilities are intact, and safety of lives and property of residents is ensured.