Disclosed is a controlling apparatus for use in a photovoltaic system. The photovoltaic system includes a solar cell array, an inverter and a solar tracker. The solar tracker includes a solar position sensor, a controller connected to the solar position sensor, a first motor connected to the controller for rotating the solar cell array according to the azimuth of the sun and a second motor connected to the controller for tilting the solar cell array according to the elevation of the sun. The controlling apparatus includes a central unit, a basic unit, a diagnosis unit, a maintenance unit, a security unit and a check unit.